X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fannotation.html;fp=help%2Fhtml%2Ffeatures%2Fannotation.html;h=a036bd52b0c1f8a9a836978aea0fbdce00436568;hb=24a22f2ce538422be0fbd24bd33db76deb326276;hp=49128c229543bf651cb3307d96693150a9f38d2d;hpb=7b5ed54cd7617abf76aaafb3b0b9d5f13b2ed888;p=jalview.git

diff --git a/help/html/features/annotation.html b/help/html/features/annotation.html
index 49128c2..a036bd5 100755
--- a/help/html/features/annotation.html
+++ b/help/html/features/annotation.html
@@ -39,6 +39,15 @@ and symbolic annotations can be added to an alignment via an <a
 href="annotationsFormat.html">Annotations File</a> dragged into the
 alignment window or loaded from the alignment's file menu.
 </p>
+<p><a name="seqannots"/><strong>Sequence Reference Annotation</strong>
+</p>
+<p>
+		Sequence reference annotation is created from 3D structure
+		data, and from the results of sequence based prediction of
+		<a href="../webServices/jnet.html">secondary structure</a> and <a
+			href="../webServices/proteinDisorder.html">disordered region</a>
+		prediction methods. 
+</p>
 <p><strong>Interactive Alignment Annotation</strong></p>
 <p>
 Annotation rows are added using the <strong>Annotation Label</strong>