X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fannotation.html;h=318c1127c41e366ec5df8de0a4e6a0a7c505cb44;hb=141040cac1e8570634a25ad6a5550a56558041fb;hp=49128c229543bf651cb3307d96693150a9f38d2d;hpb=87fa9a883d14416ba0e7f778bad69de813048b9c;p=jalview.git

diff --git a/help/html/features/annotation.html b/help/html/features/annotation.html
index 49128c2..318c112 100755
--- a/help/html/features/annotation.html
+++ b/help/html/features/annotation.html
@@ -1,7 +1,7 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -39,6 +39,15 @@ and symbolic annotations can be added to an alignment via an <a
 href="annotationsFormat.html">Annotations File</a> dragged into the
 alignment window or loaded from the alignment's file menu.
 </p>
+<p><a name="seqannots"/><strong>Sequence Reference Annotation</strong>
+</p>
+<p>
+		Sequence reference annotation is created from 3D structure
+		data, and from the results of sequence based prediction of
+		<a href="../webServices/jnet.html">secondary structure</a> and <a
+			href="../webServices/proteinDisorder.html">disordered region</a>
+		prediction methods. 
+</p>
 <p><strong>Interactive Alignment Annotation</strong></p>
 <p>
 Annotation rows are added using the <strong>Annotation Label</strong>
@@ -123,7 +132,7 @@ href="../features/jalarchive.html">Jalview Archives</a>.
 </p>
 <p><em>Current Limitations</em></p>
 <p>As of version 2.5, the Jalview user interface does not support the 
-creation and editing quantitative annotation (histograms and line graphs), or 
+creation and editing of quantitative annotation (histograms and line graphs), or 
 to create annotation associated with a specific sequence. It is also incapable of
 annotation grouping or changing the style of existing annotation (to change between line or bar charts, or to make multiple line graphs). These annotation capabilities are only possible by the import of an 
 <a href="annotationsFormat.html">Annotation file</a>.<br>
