X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2FannotationsFormat.html;h=141379f3e4c9c5711f02edfd2285b147ce2049af;hb=b8810711642d8473325c8a3d3e76cc5c3c9b5bbd;hp=17c2c8bd600ca435c9a652e26de3d5a457d245f4;hpb=79c99fe4555eca94840ab1d2571d3ebf27af50ee;p=jalview.git
diff --git a/help/html/features/annotationsFormat.html b/help/html/features/annotationsFormat.html
index 17c2c8b..141379f 100755
--- a/help/html/features/annotationsFormat.html
+++ b/help/html/features/annotationsFormat.html
@@ -1,21 +1,24 @@
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
The Alignment Annotations File
@@ -178,6 +181,9 @@ property, then the idColour will also be used to colour the sequence.
SEQUENCE_REF sequence reference statement, the sequence representative
for the group will be set to the referenced sequence.
+ The interpretation of the COMBINE statement in Version 2.8.1 was refined
+ so that only annotation line graphs with the given names ands the same
+ SEQUENCE_REF and GROUP_REF scope are grouped.
An example Annotation file is given below:
@@ -187,7 +193,7 @@ SEQUENCE_REF FER1_MESCR 5
BAR_GRAPH Bar Graph 1 <html>an <em>html tooltip</em> for Bar graph 1.</html> ||-100,-|-200,-|-300,-|-400,-|200,+|300,+|150,+
LINE_GRAPH Green Values 1.1|2.2|1.3|3.4|0.7|1.4|3.3|2.2|2.1|-1.1|3.2
LINE_GRAPH Red Values 2.1|3.2|1.3|-1.4|5.5|1.4|1.3|4.2|-1.1|1.1|3.2
-BAR_GRAPH Bar Graph 2 1,.|2,*|3,:|4,.|5,*|4,:|3,.|2|1|1|2|3|4|5|4
+BAR_GRAPH Bar Graph 2 1,.|2,*|3,:|4,.|5,*|4,:|3,.|2|1|1|2|3|4|5|4
NO_GRAPH Icons ||||E,Sheet1|E|E||||H,Sheet 2|H|H|H||||||
NO_GRAPH Purple Letters m|y|p|r|o|t|e|i|n
COLOUR Bar Graph 2 blue