- VIEW_SETREF takes either a single sequence ID string, or a - numeric index (second argument), and attempts to assign a - corresponding sequence as the reference + VIEW_SETREF marks the first sequence in the alignment, or + alternately, the one specified by the most recent SEQUENCE_REF + statement, as the reference sequence for the alignment.
- VIEW_HIDECOLS takes either a single argument consisting of a - comma separated series of integer pairs like - 3-4. These integer pairs define columns (starting from the - left-hand column 0) that should be marked as hidden in the alignment - view. +
+ HIDE_INSERTIONSThis command hides all gapped positions in the
+ current target sequence. Any columns already hidden will be
+ re-displayed.
+
The current target sequence is either the one specified by
+ the most recent SEQUENCE_REF statement, the alignment's
+ reference sequence, or the first sequence in the alignment.
- HIDE_INSERTIONS takes a either a single sequence ID or a - numeric index, or no arguments. This command marks all gapped - positions in a specified sequence (either the one located by the - arguments, the current SEQUENCE_REF, or the reference sequence for the - view). + VIEW_HIDECOLS modifies the visibility of columns in the view. + The statement is followed by a single argument consisting of a comma + separated series of single integers or integer pairs (like 3-4). + These define columns (starting from the left-hand column 0) that + should be marked as hidden in the alignment view. +
+COMPATIBILITY NOTES
The interpretation of the COMBINE statement in Version 2.8.1 was refined