X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2FannotationsFormat.html;h=fcdb90802df39a161304463cf9209768b1d99ae4;hb=refs%2Fheads%2Freleases%2FRelease_2_10_0_Branch;hp=545f0c1402c658388259d99f1c8d634f9f527954;hpb=c17661b22323a66090ea91e04751aa17461b17c5;p=jalview.git diff --git a/help/html/features/annotationsFormat.html b/help/html/features/annotationsFormat.html index 545f0c1..fcdb908 100755 --- a/help/html/features/annotationsFormat.html +++ b/help/html/features/annotationsFormat.html @@ -31,9 +31,8 @@ Alignment annotations can be imported onto an alignment since version 2.08 of Jalview, via an annotations file. It is a simple ASCII text file consisting of tab delimited records similar to the Sequence Features File, and introduced primarily for use with the - Jalview applet. + href="featuresFormat.html">Sequence Features File, and + introduced primarily for use with the Jalview applet.

@@ -55,8 +54,8 @@ alignment window.

- THE ANNOTATION FILE FORMAT
An annotation file - consists of lines containing an instruction followed by tab + THE ANNOTATION FILE FORMAT
An annotation + file consists of lines containing an instruction followed by tab delimited fields. Any lines starting with "#" are considered comments, and ignored. The sections below describe the structure of an annotation file. @@ -83,11 +82,10 @@

At the end of this document, you can also find notes on compatibility of annotation files across different versions of - Jalview. An example annotation file is - also provided along with instructions on how to import it to - Jalview. + href="#compatibility">compatibility of annotation files + across different versions of Jalview. An example + annotation file is also provided along with instructions on how to + import it to Jalview.

@@ -110,8 +108,9 @@ followed by a description for the row, which is shown in a tooltip when the user mouses over the annotation row's label. Since Jalview 2.7, the description field may also contain HTML tags (in - the same way as a sequence feature's - label), providing the text is enclosed in an <html/> tag. + the same way as a sequence + feature's label), providing the text is enclosed in an + <html/> tag.