X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2FbioJsonFormat.html;h=cb7ccc0a443e6b9408f41fedf3e0a6e7eeabceb1;hb=309af01a4a460b17ef6b924a20057b372d8fbeac;hp=a91955b49a73b26d0a8f930bc3b2ba9c6ba49e7a;hpb=e799d9ddfc25ef53a3033a6a4e00f439d320255b;p=jalview.git diff --git a/help/html/features/bioJsonFormat.html b/help/html/features/bioJsonFormat.html index a91955b..cb7ccc0 100644 --- a/help/html/features/bioJsonFormat.html +++ b/help/html/features/bioJsonFormat.html @@ -20,33 +20,64 @@ * The Jalview Authors are detailed in the 'AUTHORS' file. -->
-+ BioJSON support in Jalview +
+BioJSON is a JavaScript Object Notation (JSON) specification + for the representation and exchange of multiple sequence alignment + data.
++ Jalview 2.9 includes support for reading and writing BioJSON v1.0 + data directly, or embedded in HTML documents. It can also generate + HTML pages which employ the BioJS MSA + viewer for interactive display of BioJSON data. +
++ Finding out more about BioJSON +
++ The BioJSON specification is published at http://jalview.github.io/biojson/. +
++ Import of BioJSON data from HTML pages +
+When importing embedded data in an HTML document, Jalview + searches for a hidden (usually) input or div element named + "seqData":
+
+ <div name="seqData" id="seqData" style="display: none;">#valid BioJSON data#</div>
+
+ OR
+
+ <input type="hidden" id="seqData" name="seqData" value='#valid BioJSON data#'/>
+
+ Jalview can also import BioJSON data directly.
-+ Jalview's Support for BioJSON v1.0 +
+BioJSON exports of an alignment view include the following + additional data:
+The following data are NOT currently preserved on export:
+