X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fchimera.html;fp=help%2Fhtml%2Ffeatures%2Fchimera.html;h=11b43c87b7879afd0709f6559b28222df9d00cc7;hb=dbb8e925003ee2249a65bed6e6c74b378b673a18;hp=31ca419adb802db7b7383f45db2968c45e424023;hpb=2b0142bf85bf5b3d20612c01433e7ce29b633ec4;p=jalview.git diff --git a/help/html/features/chimera.html b/help/html/features/chimera.html index 31ca419..11b43c8 100644 --- a/help/html/features/chimera.html +++ b/help/html/features/chimera.html @@ -32,7 +32,7 @@ id pop-up menu (if you can't see this, then you need to

You can set a default choice of Jmol or Chimera structure viewer in Preferences. You can also optionally specify the path to the Chimera program here (if it differs from the standard paths searched by Jalview). -

The following menu entries are provided for viewing structure data
+

Superposing structures based on their aligned sequences
-

If several structures are available on the alignment, you may add +If several structures are available on the alignment, you may add additional structures to an existing Chimera view by selecting their entry in the appropriate pop-up menu. Jalview will ask you if you wish to add the structure to the existing alignment, and if you do, it will import @@ -63,12 +63,12 @@ menu bar of the structure view window to superpose the structures using the updated alignment.

Chimera Controls
-

The structure is by default rendered as a ribbon diagram. Moving the +The structure is by default rendered as a ribbon diagram. Moving the mouse over the structure brings up tooltips giving the residue name, PDB residue number and chain code ([RES]Num:Chain). Moving the mouse over an associated residue in an alignment window highlights the associated -atoms in the displayed structures. For comprehensive details of Chimera's commands, refer to the tool's Help menu.

+atoms in the displayed structures. For comprehensive details of Chimera's commands, refer to the tool's Help menu.

Basic screen operations (see Chimera help (http://www.cgl.ucsf.edu/chimera/current/docs/UsersGuide/mouse.html) for full details).