X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fchimera.html;fp=help%2Fhtml%2Ffeatures%2Fchimera.html;h=e1227de7541038ed6ca28ee7d2df0a4eb5ee4c57;hb=f60e6568f57c64d60a5a06f6920878d6e5063010;hp=68ac4652fbb80e0ba7aeb611ec0ec42e0161a224;hpb=3587df3dbcbd892eedd41a42d9f4e02a8b1e96ce;p=jalview.git
diff --git a/help/html/features/chimera.html b/help/html/features/chimera.html
index 68ac465..e1227de 100644
--- a/help/html/features/chimera.html
+++ b/help/html/features/chimera.html
@@ -211,41 +211,32 @@
structure in the alignment. The regions used to calculate
the superposition will be highlighted using the 'Cartoon'
rendering style, and the remaining data shown as a chain
- trace.
+ trace.
+
-
EXPERIMENTAL FEATURES
-
- These are only available if the Tools→Enable
- Experimental Features option is enabled. (Since Jalview 2.10.2)
-
- - Write Jalview features
Selecting
- this option will create new residue attributes for any
- features currently visible in the associated alignment
- views, allowing those positions to be selected and
- analysed with via Chimera's 'Render by Attribute' tool
- (found in the Tools submenu called Structure Analysis).
-
If you use this option, please remember to select
- the Refresh Menus option in Chimera's Render by
- Attribute dialog box in order to see the attributes
- derived from Jalview sequence features.
-
- View
- this function's issue in Jalview's bug tracker
- - Fetch Chimera Attributes
This
- submenu lists available Chimera residue attributes that
- can be imported as Jalview features on associated
- sequences.
This is particularly useful for
- transferring quantitative positional annotation. For
- example, structure similarity for an alignment can be
- visualised by transferring the local RMSD attributes
- generated by Chimera's Match->Align tool onto aligned
- sequences and displayed with a Graduated feature colour
- scheme.
- View
- this function's issue in Jalview's bug tracker
-
- Help
+ Write Jalview
+ features
Selecting this option will create
+ new residue attributes for any features currently visible in
+ the associated alignment views, allowing those positions to
+ be selected and analysed with via Chimera's 'Render by
+ Attribute' tool (found in the Tools submenu called Structure
+ Analysis).
If you use this option, please
+ remember to select the Refresh Menus option in
+ Chimera's Render by Attribute dialog box in order to see the
+ attributes derived from Jalview sequence features.
+
+ Fetch Chimera Attributes
This
+ submenu lists available Chimera residue attributes that can
+ be imported as Jalview features on associated sequences.
This
+ is particularly useful for transferring quantitative
+ positional annotation. For example, structure similarity for
+ an alignment can be visualised by transferring the local
+ RMSD attributes generated by Chimera's Match->Align tool
+ onto aligned sequences and displayed with a Graduated feature colour
+ scheme.
+
+ Help