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structure in the alignment. The regions used to calculate
the superposition will be highlighted using the 'Cartoon'
rendering style, and the remaining data shown as a chain
- trace.
+ trace.
-
-
Help
+ EXPERIMENTAL FEATURES
+
+ These are only available if the Tools→Enable
+ Experimental Features option is enabled. (Since Jalview 2.10.2)
+
+ - Write Jalview features
Selecting
+ this option will create new residue attributes for any
+ features currently visible in the associated alignment
+ views, allowing those positions to be selected and
+ analysed with via Chimera's 'Render by Attribute' tool
+ (found in the Tools submenu called Structure Analysis).
+
If you use this option, please remember to select
+ the Refresh Menus option in Chimera's Render by
+ Attribute dialog box in order to see the attributes
+ derived from Jalview sequence features.
+
+ View
+ this function's issue in Jalview's bug tracker
+ - Fetch Chimera Attributes
This
+ submenu lists available Chimera residue attributes that
+ can be imported as Jalview features on associated
+ sequences.
This is particularly useful for
+ transferring quantitative positional annotation. For
+ example, structure similarity for an alignment can be
+ visualised by transferring the local RMSD attributes
+ generated by Chimera's Match->Align tool onto aligned
+ sequences and displayed with a Graduated feature colour
+ scheme.
+ View
+ this function's issue in Jalview's bug tracker
+
+ Help