X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fchimera.html;h=68ac4652fbb80e0ba7aeb611ec0ec42e0161a224;hb=b1e2aea95b3839a1a53f809c579666075cd3d348;hp=5ae00afe9955a5e36d1f89b0e1db7a8e8c02d6ea;hpb=a818865e1c7ea11c5a02d5bd90d4860125aa0350;p=jalview.git
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structure in the alignment. The regions used to calculate
the superposition will be highlighted using the 'Cartoon'
rendering style, and the remaining data shown as a chain
- trace.
+ trace.
-
-
Help
+ EXPERIMENTAL FEATURES
+
+ These are only available if the Tools→Enable
+ Experimental Features option is enabled. (Since Jalview 2.10.2)
+
+ - Write Jalview features
Selecting
+ this option will create new residue attributes for any
+ features currently visible in the associated alignment
+ views, allowing those positions to be selected and
+ analysed with via Chimera's 'Render by Attribute' tool
+ (found in the Tools submenu called Structure Analysis).
+
If you use this option, please remember to select
+ the Refresh Menus option in Chimera's Render by
+ Attribute dialog box in order to see the attributes
+ derived from Jalview sequence features.
+
+ View
+ this function's issue in Jalview's bug tracker
+ - Fetch Chimera Attributes
This
+ submenu lists available Chimera residue attributes that
+ can be imported as Jalview features on associated
+ sequences.
This is particularly useful for
+ transferring quantitative positional annotation. For
+ example, structure similarity for an alignment can be
+ visualised by transferring the local RMSD attributes
+ generated by Chimera's Match->Align tool onto aligned
+ sequences and displayed with a Graduated feature colour
+ scheme.
+ View
+ this function's issue in Jalview's bug tracker
+
+ Help