X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fchimera.html;h=68ac4652fbb80e0ba7aeb611ec0ec42e0161a224;hb=b1e2aea95b3839a1a53f809c579666075cd3d348;hp=89a29c9959267592b1303253d85f3737abb2bade;hpb=01dd726fbb6c68bd834304e49eef1d72cc9586f4;p=jalview.git
diff --git a/help/html/features/chimera.html b/help/html/features/chimera.html
index 89a29c9..68ac465 100644
--- a/help/html/features/chimera.html
+++ b/help/html/features/chimera.html
@@ -218,27 +218,32 @@
These are only available if the Tools→Enable
Experimental Features option is enabled. (Since Jalview 2.10.2)
- - Write Jalview features
- Selecting this option will create new residue attributes
- for any features currently visible in the associated
- alignment views, allowing those positions to be selected
- and analysed with via Chimera's 'Render by Attribute' tool
- (found in the Tools submenu called Structure Analysis).
-
If you use this option, please remember to select the
- Refresh Menus option in Chimera's Render by
- Attribute dialog box in order to see the attributes
- derived from Jalview sequence features.
- - Fetch Chimera Attributes
- This submenu lists available Chimera residue attributes
- that can be imported as Jalview features on associated
- sequences.
This is particularly useful for
- transferring quantitative positional annotation. For
- example, structure similarity for an alignment can be
- visualised by transferring the local RMSD attributes
- generated by Chimera's Match->Align tool onto aligned
- sequences and displayed with a Graduated feature colour
- scheme.
+ - Write Jalview features
Selecting
+ this option will create new residue attributes for any
+ features currently visible in the associated alignment
+ views, allowing those positions to be selected and
+ analysed with via Chimera's 'Render by Attribute' tool
+ (found in the Tools submenu called Structure Analysis).
+
If you use this option, please remember to select
+ the Refresh Menus option in Chimera's Render by
+ Attribute dialog box in order to see the attributes
+ derived from Jalview sequence features.
+
+ View
+ this function's issue in Jalview's bug tracker
+ - Fetch Chimera Attributes
This
+ submenu lists available Chimera residue attributes that
+ can be imported as Jalview features on associated
+ sequences.
This is particularly useful for
+ transferring quantitative positional annotation. For
+ example, structure similarity for an alignment can be
+ visualised by transferring the local RMSD attributes
+ generated by Chimera's Match->Align tool onto aligned
+ sequences and displayed with a Graduated feature colour
+ scheme.
+ View
+ this function's issue in Jalview's bug tracker
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