X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fchimera.html;h=68ac4652fbb80e0ba7aeb611ec0ec42e0161a224;hb=b1e2aea95b3839a1a53f809c579666075cd3d348;hp=98d89661866a5efec3874c1d7b75e8460af25081;hpb=4497a70ab5bf22b6b6a16c723949625fcca4845b;p=jalview.git
diff --git a/help/html/features/chimera.html b/help/html/features/chimera.html
index 98d8966..68ac465 100644
--- a/help/html/features/chimera.html
+++ b/help/html/features/chimera.html
@@ -36,9 +36,9 @@
You can set a default choice of Jmol or Chimera structure viewer in
Preferences. You can also
optionally specify the path to the Chimera program here (if it
- differs from the standard paths searched by Jalview).
- Please make sure your version of Chimera is up to
- date. Jalview requires at least Chimera version 1.11.1
+ differs from the standard paths searched by Jalview).
Please
+ make sure your version of Chimera is up to date. Jalview requires
+ at least Chimera version 1.11.1
If you save your Jalview session as a project file, the state of any @@ -65,13 +65,23 @@ number and chain code ([RES]Num:Chain). Moving the mouse over an associated residue in an alignment window highlights the associated atoms in the displayed structures. When residues are selected in the - Chimera window, they are highlighted on the alignment. For - comprehensive details of Chimera's commands, refer to the tool's - Help menu. + Chimera window, they are highlighted on the alignment. +
For comprehensive details of Chimera's commands, refer to the + tool's Help menu.
+
+ Selecting residues in Jalview from Chimera
+ When a selection is highlighted in a Jalview window, use the
+ Select→Select Highlighted Region or press B
+ to add the mapped positions to the alignment window's column
+ selection.
Hint: Use your machine's 'switch
+ application' key combination (Alt-Tab on Windows and Linux,
+ Cmd-Tab on OSX) to quickly switch between UCSF Chimera and Jalview
+ before pressing 'B' to select highlighted regions.
+
Basic screen operations (see Chimera help at + href="http://www.cgl.ucsf.edu/chimera/current/docs/UsersGuide/mouse.html">Chimera + help at http://www.cgl.ucsf.edu/chimera/current/docs/UsersGuide/mouse.html for full details).