X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fchimera.html;h=e1227de7541038ed6ca28ee7d2df0a4eb5ee4c57;hb=0bee8aadc22e41e4793db251a7d37a839bd77db8;hp=68ac4652fbb80e0ba7aeb611ec0ec42e0161a224;hpb=f2779aae6cd89facf15b81e053179e15e0315546;p=jalview.git diff --git a/help/html/features/chimera.html b/help/html/features/chimera.html index 68ac465..e1227de 100644 --- a/help/html/features/chimera.html +++ b/help/html/features/chimera.html @@ -211,41 +211,32 @@ structure in the alignment. The regions used to calculate the superposition will be highlighted using the 'Cartoon' rendering style, and the remaining data shown as a chain - trace.

+ trace.
+
-
  • EXPERIMENTAL FEATURES
    - - These are only available if the Tools→Enable - Experimental Features option is enabled. (Since Jalview 2.10.2) -
  • -
  • Help
    +
  • Write Jalview + features
    Selecting this option will create + new residue attributes for any features currently visible in + the associated alignment views, allowing those positions to + be selected and analysed with via Chimera's 'Render by + Attribute' tool (found in the Tools submenu called Structure + Analysis).

    If you use this option, please + remember to select the Refresh Menus option in + Chimera's Render by Attribute dialog box in order to see the + attributes derived from Jalview sequence features. +
  • +
  • Fetch Chimera Attributes
    This + submenu lists available Chimera residue attributes that can + be imported as Jalview features on associated sequences.
    This + is particularly useful for transferring quantitative + positional annotation. For example, structure similarity for + an alignment can be visualised by transferring the local + RMSD attributes generated by Chimera's Match->Align tool + onto aligned sequences and displayed with a Graduated feature colour + scheme.
  • + +
  • Help
    • Chimera Help