X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fclarguments.html;h=16b0dc0f80ffcb0a1a7cf2688b5d9d3d066e8c18;hb=43d326c3a7616aedecfce6f7980b3831ec25243a;hp=88657f8d65c5a80e0bada0b42ab158655c3f9ac8;hpb=ab7509436f09413b122dace2ecd6692f6f06d347;p=jalview.git
diff --git a/help/html/features/clarguments.html b/help/html/features/clarguments.html
index 88657f8..16b0dc0 100644
--- a/help/html/features/clarguments.html
+++ b/help/html/features/clarguments.html
@@ -1,21 +1,24 @@
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
Jalview Command Line Arguments
@@ -50,7 +53,7 @@
| Set the colourscheme for the alignment. This can be any of
the built-in colourschemes, a name of a predefined colourscheme
- (defined in the jalview properties file), or an 'inline' colourscheme
+ (defined in the Jalview properties file), or an 'inline' colourscheme
(see the applet's colour parameter for more information). |
@@ -123,6 +126,13 @@
arguments have been processed
+
+ |
+ -jabaws URL
+ |
+ Specify the URL of the preferred JABAWS server
+ |
+
|
-vdoc VAMSAS DOCUMENT FILE/URL
@@ -172,6 +182,10 @@
| -blc FILE |
Create alignment file FILE in BLC format. |
+
+ -json FILE |
+ Create alignment file FILE in JSON format. |
+
-jalview FILE |
@@ -191,6 +205,10 @@
-eps FILE |
Create EPS file FILE from alignment. |
+
+ -svg FILE |
+ Create Scalable Vector Graphics file FILE from alignment. |
+