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-
-
-
-DAS Features
-
-
-
-
- DAS Sequence Feature Retrieval
-
- Jalview includes a client for retrieving sequences and their
- features via the Distributed Annotation System.
-
- - Open the Feature Settings panel by selecting "View
- -> Feature Settings..."
- - Click on the "DAS
- Settings" tabbed pane.
-
- - Select the sources to use for DAS feature retrieval, then
- click the "Fetch DAS Features" button.
-
- - Cancelling Feature Retrieval
Press the Cancel
- Fetch button to immediately stop feature retrieval. This
- will not remove any features already added to the alignment,
- but will halt any outstanding DAS requests.The cancel
- fetch button is of particular use when one or more DAS
- annotation servers are not responding!
-
-
-
-
- If your DAS source selection contains sources which use UniProt
- accession ids, you will be asked whether Jalview should find UniProt
- Accession ids for the given sequence names. It is important to
- realise that many DAS sources only use UniProt accession ids, rather
- than Swissprot/UniProt sequence names.
The database
- reference fetcher documentation describes how Jalview discovers
- what database references are appropriate for the sequences in the
- alignment.
-
- - Note
Please remember to save your
- alignment if either the start/end numbering, or the sequence IDs
- were updated during the ID retrieval process.
-
-
-
- DAS support was introduced in Jalview Version 2.1.
-
-
-
- The DAS registry at http://www.dasregistry.org was
- decommissioned early in 2015. An unmaintained mirror is currently
- hosted at http://www.ebi.ac.uk/das-srv/registry/.
-
-
-
-