X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fdasfeatures.html;h=06901118b0098fd1c94443759da4448f77f91154;hb=8d0d8f010041eb2089bfe0bf7e5ad481ceae56d5;hp=e18e273bc6e63d17a8266460e4a4915b193850f3;hpb=6ab4ef1cc71ff9d28a21a139db69e4a8351a3fb5;p=jalview.git diff --git a/help/html/features/dasfeatures.html b/help/html/features/dasfeatures.html index e18e273..0690111 100644 --- a/help/html/features/dasfeatures.html +++ b/help/html/features/dasfeatures.html @@ -1,18 +1,65 @@ + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. + --> + +DAS Features + + + +

DAS Sequence Feature Retrieval

+

Jalview includes a client for retrieving sequences and their features via +the Distributed Annotation System.

+
    +
  1. Open the Feature Settings panel by selecting "View -> + Feature Settings..."
    2. +
  2. Click on the "DAS Settings" + tabbed pane.
    3. +
  3. Select the sources to use for DAS feature retrieval, then + click the "Fetch DAS Features" button. +
      +
    • Cancelling Feature Retrieval
      + Press the Cancel Fetch button to immediately stop + feature retrieval. This will not remove any features already added to + the alignment, but will halt any outstanding DAS requests.The + cancel fetch button is of particular use when one or more DAS + annotation servers are not responding! +
    +
    4. +
+

If your DAS source selection contains sources which use Uniprot +accession ids, you will be asked whether Jalview should find Uniprot +Accession ids for the given sequence names. It is important to realise +that many DAS sources only use Uniprot accession ids, rather than +Swissprot/Uniprot sequence names.
+The database reference +fetcher documentation describes how Jalview discovers what database +references are appropriate for the sequences in the alignment. +

+

  +

DAS support was introduced in Jalview Version 2.1.

+

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