X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fdasfeatures.html;h=1965e70471b246717556488b658e5262dee34135;hb=9e372eb592af4849237e3387a7f6becb33034c1b;hp=16351835fb162cb79cfc1f9c4053a067393c3078;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git
diff --git a/help/html/features/dasfeatures.html b/help/html/features/dasfeatures.html
index 1635183..1965e70 100644
--- a/help/html/features/dasfeatures.html
+++ b/help/html/features/dasfeatures.html
@@ -24,42 +24,54 @@
-DAS Sequence Feature Retrieval
-Jalview includes a client for retrieving sequences and their features via
-the Distributed Annotation System.
-
- - Open the Feature Settings panel by selecting "View ->
- Feature Settings..."
- - Click on the "DAS Settings"
- tabbed pane.
- - Select the sources to use for DAS feature retrieval, then
- click the "Fetch DAS Features" button.
-
- - Cancelling Feature Retrieval
- Press the Cancel Fetch button to immediately stop
- feature retrieval. This will not remove any features already added to
- the alignment, but will halt any outstanding DAS requests.The
- cancel fetch button is of particular use when one or more DAS
- annotation servers are not responding!
-
-
-
-If your DAS source selection contains sources which use Uniprot
-accession ids, you will be asked whether Jalview should find Uniprot
-Accession ids for the given sequence names. It is important to realise
-that many DAS sources only use Uniprot accession ids, rather than
-Swissprot/Uniprot sequence names.
-The database reference
-fetcher documentation describes how Jalview discovers what database
-references are appropriate for the sequences in the alignment.
-
- - Note
- Please remember to save your alignment if either the start/end
- numbering, or the sequence IDs were updated during the ID
- retrieval process.
-
-
-
DAS support was introduced in Jalview Version 2.1.
-
+
+ DAS Sequence Feature Retrieval
+
+ Jalview includes a client for retrieving sequences and their
+ features via the Distributed Annotation System.
+
+ - Open the Feature Settings panel by selecting "View
+ -> Feature Settings..."
+ - Click on the "DAS
+ Settings" tabbed pane.
+
+ - Select the sources to use for DAS feature retrieval, then
+ click the "Fetch DAS Features" button.
+
+ - Cancelling Feature Retrieval
Press the Cancel
+ Fetch button to immediately stop feature retrieval. This
+ will not remove any features already added to the alignment,
+ but will halt any outstanding DAS requests.The cancel
+ fetch button is of particular use when one or more DAS
+ annotation servers are not responding!
+
+
+
+
+ If your DAS source selection contains sources which use UniProt
+ accession ids, you will be asked whether Jalview should find UniProt
+ Accession ids for the given sequence names. It is important to
+ realise that many DAS sources only use UniProt accession ids, rather
+ than Swissprot/UniProt sequence names.
The database
+ reference fetcher documentation describes how Jalview discovers
+ what database references are appropriate for the sequences in the
+ alignment.
+
+ - Note
Please remember to save your
+ alignment if either the start/end numbering, or the sequence IDs
+ were updated during the ID retrieval process.
+
+
+
+ DAS support was introduced in Jalview Version 2.1.
+
+
+
+ The DAS registry at http://www.dasregistry.org was
+ decommissioned early in 2015. An unmaintained mirror is currently
+ hosted at http://www.ebi.ac.uk/das-srv/registry/.
+
+