X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fdasfeatures.html;h=e18e273bc6e63d17a8266460e4a4915b193850f3;hb=6ab4ef1cc71ff9d28a21a139db69e4a8351a3fb5;hp=853f6ef88db728db130228da2a79267e83ca9afd;hpb=a3d0d27a693f66ef0e7b1c64f6ce6e0abdb4b7bd;p=jalview.git
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-
-
-DAS Features
-
-
-
-DAS Sequence Feature Retrieval
-Jalview includes a client for retrieving sequences and their features via
-the Distributed Annotation System.
-
- - Open the Feature Settings panel by selecting "View ->
- Feature Settings..."
- - Click on the "DAS Settings"
- tabbed pane.
- - Select the sources to use for DAS feature retrieval, then
- click the "Fetch DAS Features" button.
-
- - Cancelling Feature Retrieval
- Press the Cancel Fetch button to immediately stop
- feature retrieval. This will not remove any features already added to
- the alignment, but will halt any outstanding DAS requests.The
- cancel fetch button is of particular use when one or more DAS
- annotation servers are not responding!
-
-
-
-If your DAS source selection contains sources which use Uniprot
-accession ids, you will be asked whether Jalview should find Uniprot
-Accession ids for the given sequence names. It is important to realise
-that many DAS sources only use Uniprot accession ids, rather than
-Swissprot/Uniprot sequence names.
-The database reference
-fetcher documentation describes how Jalview discovers what database
-references are appropriate for the sequences in the alignment.
-
- - Note
- Please remember to save your alignment if either the start/end
- numbering, or the sequence IDs were updated during the ID
- retrieval process.
-
-
-
DAS support was introduced in Jalview Version 2.1.
-
-
-
+