X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fdasfeatures.html;h=e18e273bc6e63d17a8266460e4a4915b193850f3;hb=6ab4ef1cc71ff9d28a21a139db69e4a8351a3fb5;hp=9ef7e8431fbab531293db97f072c9fdd7c2936b7;hpb=d423f22792e47dbc800ae220a58677f988971d06;p=jalview.git diff --git a/help/html/features/dasfeatures.html b/help/html/features/dasfeatures.html index 9ef7e84..e18e273 100644 --- a/help/html/features/dasfeatures.html +++ b/help/html/features/dasfeatures.html @@ -15,48 +15,4 @@ * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License along with Jalview. If not, see . ---!> - -DAS Features - - - -

DAS Sequence Feature Retrieval

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Jalview includes a client for retrieving sequences and their features via -the Distributed Annotation System.

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  1. Open the Feature Settings panel by selecting "View -> - Feature Settings..."
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  2. Click on the "DAS Settings" - tabbed pane.
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  3. Select the sources to use for DAS feature retrieval, then - click the "Fetch DAS Features" button. -
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    • Cancelling Feature Retrieval
      - Press the Cancel Fetch button to immediately stop - feature retrieval. This will not remove any features already added to - the alignment, but will halt any outstanding DAS requests.The - cancel fetch button is of particular use when one or more DAS - annotation servers are not responding! -
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If your DAS source selection contains sources which use Uniprot -accession ids, you will be asked whether Jalview should find Uniprot -Accession ids for the given sequence names. It is important to realise -that many DAS sources only use Uniprot accession ids, rather than -Swissprot/Uniprot sequence names.
-The database reference -fetcher documentation describes how Jalview discovers what database -references are appropriate for the sequences in the alignment. -

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DAS support was introduced in Jalview Version 2.1.

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