-DAS Settings
-Jalview can retrieve features from multiple DAS - sources. The DAS sources are selected in the DAS settings panel.
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-
On start up of the DAS Settings panel, Jalview will use the registry URL (default
- is http://das.sanger.ac.uk/registry/das1/sources/) to retrieve a list of currently
- available DAS sources. These are all listed in the table using the sources'
- Nickname as an identifier.
- Click on a Nickname in the table to reveal more information about that service
- in the panel to the right of the table.
-
You can filter the visible DAS sources by authority, type and "label". - You should read the DAS documentation to understand more about these values. -
Tick the box "Use Source" so that Jalview will use a particular source - when fetching features. -
You can add your own DAS source to the list by clicking the "Add Local - Source" button. Enter the URL and nickname of your additional service. - It should be noted that Jalview 2.1 will not query additional sources for more - information, but this will be implemented in future editions. -
- - + + +
+DAS Settings
+Jalview can retrieve sequences and features from many DAS sources. The DAS sources that +it uses are discovered and selected via the DAS settings panel, +opened either from the View→Feature +Settings dialog box from the alignment window's menu bar, or the Tools→Preferences dialog box +opened from the Desktop menu bar.
+
+
The available sources are listed in the table using each source's +Nickname as its identifier. Clicking on a source's entry in the table +reveals more information about that service in the panel to the right. +Select the tickbox in the "Use Source" column for a source to +add it to the set Jalview queries for alignment and sequence features.
+You can filter the visible DAS sources by authority, type and +"label". You should read the DAS documentation to understand +more about these values. +
Updating the list of sources
+When the DAS Settings panel is first opened, and when the 'Refresh +source' buton is pressed, a list of DAS sources is retrieved from the +DAS registry URL (set by default to the DAS registration server at +http://das.sanger.ac.uk/registry/das1/sources/).
+Adding your own DAS Sources
+You can add your own DAS source to the list by clicking the +"Add Local Source" button. Enter the URL and nickname of your +additional service. It should be noted that Jalview 2.1 will not query +additional sources for more information, but this will be implemented in +future editions. +
+ +