X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fensemblsequencefetcher.html;h=e547c5803ba099b6b2c27dc254ed3ca0d395818f;hb=60541afc96ff3a4f5b79b78009922f373cbc29c3;hp=54b57a33f87a42d8016cfed8b81f6e4a7b5c203a;hpb=d796e03de093e79af675ec649252ca6de1fb6aa1;p=jalview.git diff --git a/help/html/features/ensemblsequencefetcher.html b/help/html/features/ensemblsequencefetcher.html index 54b57a3..e547c58 100644 --- a/help/html/features/ensemblsequencefetcher.html +++ b/help/html/features/ensemblsequencefetcher.html @@ -29,20 +29,16 @@ retrieve annotated transcripts, peptides and genomic contigs from ENSEMBL.
- Database selection dialog for fetching sequences (introduced in Jalview 2.8) + Database selection dialog with Ensembl sequence source tooltip -

- Two types of ENSEMBL source are provided. ENSEMBL queries the main - ENSEMBL warehouse containing data for higher eukaryotes, and +

Two types of ENSEMBL source are provided. ENSEMBL queries the + main ENSEMBL warehouse containing data for higher eukaryotes, and EnsemblGenomes, which queries Ensembl Pathogens, and other - warehouses.
- Ensembl support is new in Jalview, and we expect to merge - these sources in a future release. -

+ warehouses.

- General Use
If you have a set of Ensembl gene - or transcript IDs, then you can retrieve them via the + General Use
If you have a set of Ensembl + gene or transcript IDs, then you can retrieve them via the sequence fetcher dialog opened after selecting the most appropriate source (either 'ENSEMBL', or Ensembl Genomes). However, Jalview's Ensembl client has a couple of additional capabilities: