X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Ffeaturesettings.html;h=3830302a79132be740fcd233d01c871bc8be105d;hb=68dcaa7437590985b988a95338a36821c0ee641e;hp=d0a9ab76842fd2f94e21c1b1b6c86e04f05cef7a;hpb=a8f483d04205bb8273ee311c12968b7e86d205fa;p=jalview.git diff --git a/help/html/features/featuresettings.html b/help/html/features/featuresettings.html index d0a9ab7..3830302 100755 --- a/help/html/features/featuresettings.html +++ b/help/html/features/featuresettings.html @@ -7,16 +7,18 @@ * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * - * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. ---> + --> Sequence Feature Settings Dialog Box @@ -74,8 +76,8 @@ alignment based on the average score or total number of currently active features and groups on each sequence. To order the alignment using a specific feature type, use the sort by .. entries in the pop-up menu for that type.
-Feature sorting and graduated feature colouring was introduced -in jalview 2.5

+Feature sorting and graduated feature colouring were introduced +in Jalview 2.5

Transparency and Feature Ordering

It is important to realise that sequence features are often not @@ -83,7 +85,7 @@ distinct and often overlap (for example, a metal binding site feature may be attached to one position along a stretch of sequence marked with a secondary structure feature).

The ordering of the sequence features in the dialog box list is -the order used by jalview for rendering sequence features. A feature at +the order used by Jalview for rendering sequence features. A feature at the bottom of the list is rendered below a feature higher up in the list.
You can change the order of a feature by