Feature settings pop-up menu
Right-click
- on a feature to open a pop-up menu that allows you to sort the
- alignment or current selection using that feature type (see below),
- or toggle the type of colouring used for the feature. Features may
- be highlighted with either a single colour or a feature colourscheme based on either the scores associated with
- that feature or from the feature's description (e.g. to distinguish
- different names associated with a DOMAIN feature).
+ on a feature to open a pop-up menu that allows you to
+
+ Features may be highlighted with either a single colour or a feature colourscheme based on + either the scores associated with that feature or from the feature's + description (e.g. to distinguish different names associated with a + DOMAIN feature).
- Ordering alignment by features
The 'Seq
- Sort by Score' and 'Seq Sort by Density' buttons will sort the
- alignment based on the average score or total number of currently
- active features and groups on each sequence. To order the alignment
- using a specific feature type, use the sort by .. entries
- in the pop-up menu for that type.
Feature sorting
- and graduated feature colouring were introduced in Jalview 2.5
+ Ordering alignment by
+ features
The 'Seq Sort by Score' and 'Seq Sort by
+ Density' buttons will sort the alignment based on the average score
+ or total number of currently active features and groups on each
+ sequence. To order the alignment using a specific feature type, use
+ the sort by .. entries in the pop-up menu for that type.
+ Feature sorting and graduated feature colouring were
+ introduced in Jalview 2.5
@@ -104,7 +110,7 @@
the bottom of the list is rendered below a feature higher
up in the list.
You can change
the order of a feature by dragging it up and down the list with
- the mouse.
+ the mouse (not applet).
The Optimise order button (currently only @@ -112,12 +118,11 @@ ordering based on the average length of each feature type.
- The transparency slider setting (currently - only available in the application version) controls the visibility - of features rendered below other features. Reducing the transparency - will mean that features at the top of the list can obscure features - lower down, and increasing it allows the user to 'see through' the - upper layers of a set of features. + The transparency slider setting controls + the visibility of features rendered below other features. Reducing + the transparency will mean that features at the top of the list can + obscure features lower down, and increasing it allows the user to + 'see through' the upper layers of a set of features.
You can save all features, with their