X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Ffeaturesettings.html;h=c1d08a933a0fe0077ab75db20c0f35a70f32fd9f;hb=a45774ee31d9f35d4eff46d54d7deab719afb092;hp=390ad78300b48807d5db3a1f0871d83d42d95879;hpb=c53aeee9a688f68d64106a968876e542f701fbc6;p=jalview.git

diff --git a/help/html/features/featuresettings.html b/help/html/features/featuresettings.html
index 390ad78..c1d08a9 100755
--- a/help/html/features/featuresettings.html
+++ b/help/html/features/featuresettings.html
@@ -1,7 +1,7 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
@@ -31,17 +31,19 @@ Sequence Feature Settings for the Jalview Application</img></center>
 <p>The top section of the dialog box lists all the sequence feature
 groups, along with a tickbox for each that controls whether its features
 are displayed. The table in the middle lists all the features in the
-currently selected groups, along with their display colour and whether
+currently selected groups, along with their display style and whether
 they are currently being displayed (only the ticked features and groups
-are displayed). <strong><em>You can change the colour used
-for a feature in the associated alignment by clicking on its colour box.</em></strong></p>
+are displayed). <strong><em>You can change the colour or
+shading style used for a feature in the associated alignment by clicking
+on its colour box.</em></strong></p>
 <p><strong><em>Feature settings pop-up menu</em></strong><br>
 <strong>Right-click</strong> on a feature to open a pop-up menu that
 allows you to sort the alignment or current selection using that feature
-type (see below), or create a <a href="featureschemes.html">feature
-colourscheme</a> based on either the scores associated with that feature or
-from the feature's description (e.g. to distinguish different names
-associated with a DOMAIN feature).</p>
+type (see below), or toggle the type of colouring used for the feature.
+Features may be highlighted with either a single colour or a <a
+	href="featureschemes.html">feature colourscheme</a> based on either the
+scores associated with that feature or from the feature's description
+(e.g. to distinguish different names associated with a DOMAIN feature).</p>
 <p><strong>Ordering alignment by features</strong><br>
 The 'Seq Sort by Score' and 'Seq Sort by Density' buttons will sort the
 alignment based on the average score or total number of currently active
