X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Ffeaturesettings.html;h=c433e1f7a429c8cd4e8ffb97e66d85cce4b0729c;hb=496a78f25054b4003f6115c7194a2a466c44197f;hp=9526ed5622de44f130b7308f26819af02a817111;hpb=3c9a109fe89504b4713bfaf612275edc8c07e433;p=jalview.git

diff --git a/help/html/features/featuresettings.html b/help/html/features/featuresettings.html
index 9526ed5..c433e1f 100755
--- a/help/html/features/featuresettings.html
+++ b/help/html/features/featuresettings.html
@@ -1,22 +1,24 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
  *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
--->
+ -->
 <head>
 <title>Sequence Feature Settings Dialog Box</title>
 </head>
@@ -40,13 +42,12 @@ on its colour box.</em></strong></p>
 	<p>
 		<a name="selectbyfeature"><strong><em>Selecting
 					alignment columns by feature</em></strong></a><br> <strong>Double-clicking
-			a feature type</strong> allows you to select columns in the alignment that
-		contain (or do not contain) features of that type. If a region of the
-		alignment is currently selected, then only features in the current
-		selection will be searched. The following keys affect the way in which
-		selections are made:
-	
-	<ul>
+			a feature type</strong> in the <strong>Feature
+			Settings</strong> dialog allows you to select columns in the
+		alignment that contain (or do not contain) features of that type. If a
+		region of the alignment is currently selected, then only features in
+		the current selection will be searched. The following keys affect the
+		way in which selections are made:<ul>
 		<li>Hold down <strong>Alt</strong> to select columns not
 			containing features of a particular type.
 		</li>
@@ -75,8 +76,8 @@ alignment based on the average score or total number of currently active
 features and groups on each sequence. To order the alignment using a
 specific feature type, use the <em>sort by ..</em> entries in the pop-up
 menu for that type.<br>
-<em>Feature sorting and graduated feature colouring was introduced
-in jalview 2.5</em></p>
+<em>Feature sorting and graduated feature colouring were introduced
+in Jalview 2.5</em></p>
 
 <p><strong>Transparency and Feature Ordering</strong></p>
 <p>It is important to realise that sequence features are often not
@@ -84,7 +85,7 @@ distinct and often overlap (for example, a metal binding site feature
 may be attached to one position along a stretch of sequence marked with
 a secondary structure feature).</p>
 <p>The ordering of the sequence features in the dialog box list is
-the order used by jalview for rendering sequence features. A feature at
+the order used by Jalview for rendering sequence features. A feature at
 the bottom of the list is rendered <em>below</em> a feature higher up in
 the list.<br>
 <em><strong>You can change the order of a feature by
