X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fgroovy.html;h=ead44369ef3f87aa2d19368b9056f2611a5880ac;hb=2b8c0785318a3528e1876e8e2dd48b7d831eae69;hp=3e24ccd788248e6288ad9bcf4dee3770bb43f2f5;hpb=db93a1adcbe0a4eaaf06e0a70ade0d6c5c1961c3;p=jalview.git

diff --git a/help/html/features/groovy.html b/help/html/features/groovy.html
index 3e24ccd..ead4436 100644
--- a/help/html/features/groovy.html
+++ b/help/html/features/groovy.html
@@ -1,7 +1,7 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -108,9 +108,18 @@ print currentAlFrame.getTitle();</pre>
     simplified the alignment analysis programming interface in Jalview
     2.10 to make it easy for you to add your own dynamic annotation
     tracks with Groovy. Have a look at the <a
-      href="../groovy/featureCounter.html">featureCounter.groovy</a>
+      href="../groovy/featuresCounter.html">featuresCounter.groovy</a>
     example for more information.
   </p>
+  <p><a name="groovyColours"/>
+    <em>Creating custom colourschemes</em><br/>
+    You can create your own alignment colourschemes with a groovy script. We've provided two examples:<br/>
+    <ul>
+    <li><a href="http://www.jalview.org/examples/groovy/colourConserved.groovy">colourConserved.groovy</a> creates an 'Conserved' colourscheme - similar to the classic <a href="http://www.nrbsc.org/old/gfx/genedoc/">GeneDOC</a> shading model.</li>
+    <li><a href="http://www.jalview.org/examples/groovy/colourUnconserved.groovy">colourUnconserved.groovy</a> creates an 'Unconserved' colourscheme, where any unconserved residues are coloured pink.</li>
+    
+    </ul>
+  </p>
 
 </body>
 </html>
