X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2FhiddenRegions.html;h=73183c586ca96de10a2c8c4e4ea38007e37c11ae;hb=66830878ef77fb7030de00ab6e302ef9936f0a3b;hp=b119b91c1914e42811f46c21aa4d9b152ff20617;hpb=d3dd5e71a79f3841f0e70bca7934a9ebf443aca7;p=jalview.git

diff --git a/help/html/features/hiddenRegions.html b/help/html/features/hiddenRegions.html
index b119b91..73183c5 100644
--- a/help/html/features/hiddenRegions.html
+++ b/help/html/features/hiddenRegions.html
@@ -1,4 +1,21 @@
 <html>
+<!--
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+-->
 <head>
 <title>Hidden Regions</title>
 </head>
@@ -7,7 +24,9 @@
 <p>Use the keyboard key &quot;H&quot; to hide / reveal selected
 columns and sequences. To hide / reveal only selected sequences, use
 &quot;Shift H&quot;, to hide / reveal only selected columns, use
-&quot;Control H&quot;.</p>
+&quot;Control H&quot;. You can also use &quot;Shift&quot; and
+&quot;Control&quot; together to hide everything but the currently
+selected region.</p>
 <p><strong><em>Hiding Sequences</em></strong><br>
 To hide selected sequences in an alignment, use the <strong>&quot;View
 -&gt; Hide -&gt; Selected Sequences&quot;</strong> menu item or simply select <strong>&quot;Hide
@@ -24,10 +43,10 @@ the sequences in that group. <br>
 The hidden representative sequences will not be used in any calculations
 or web service alignments (<em>nb. this may change in the future</em>).
 <p><strong><em>Hidden Sequence Representatives and
-Multiple</em> Views</strong><br>
+Multiple Views</em></strong><br>
 <em>A word of warning: hidden representative sequence groups are
-only partly implemented in the jalview 2.2 release, and the following
-issues will be resolved in the future.</em><br>
+(still) only partly implemented in the jalview 2.5 release, and we hope
+to deal with the following issues in the future.</em><br>
 Currently, represented hidden groups are only made correctly if there is
 just one alignment view. When multiple views on an alignment exist, then
 the represented group will be displayed correctly in the view in which
@@ -56,11 +75,11 @@ constraints apply:
 	alignment</a></strong> and <strong><a href="../calculations/pca.html">PCA</a></strong>
 	calculations will only be performed using the <em>visible</em> parts of
 	the alignment.</li>
-	<li><a href="../webservices/msaclient.html">Multiple Sequence
+	<li><a href="../webServices/msaclient.html">Multiple Sequence
 	Alignments</a> are performed locally on on each visible chunk of the input,
 	and concatenated with the hidden regions to form the final result.
-	</p>
-	</li>
+</p>
+</li>
 </ul>
 <p><strong>Column Separability</strong><br>
 Calculations where hidden columns are excluded, and a single analysis
