X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fjmol.html;h=2f1019660d74b8127338e8b6beba1dc16fc676c6;hb=37de9310bec3501cbc6381e0c3dcb282fcaad812;hp=3fa1563618d694bb5c60f86bef119893227fc465;hpb=c17661b22323a66090ea91e04751aa17461b17c5;p=jalview.git

diff --git a/help/html/features/jmol.html b/help/html/features/jmol.html
index 3fa1563..2f10196 100644
--- a/help/html/features/jmol.html
+++ b/help/html/features/jmol.html
@@ -32,12 +32,12 @@
     structures opened by entries in the <strong>&quot;Structure&quot;</strong>
     submenu in the <a href="../menus/popupMenu.html">sequence id
       pop-up menu</a> (if you can't see this, then you need to <a
-      href="viewingpdbs.html"
-    >associate a PDB structure</a> with the sequence). Jmol is available
-    from the Jalview desktop and should also run in the JalviewLite
-    applet, providing the browser supports Java 1.5. If Jmol is not
-    available, then the original <a href="pdbviewer.html">internal
-      pdb viewer</a> will be used as a fallback.
+      href="viewingpdbs.html">associate a PDB structure</a> with
+    the sequence). Jmol is available from the Jalview desktop and should
+    also run in the JalviewLite applet, providing the browser supports
+    Java 1.5. If Jmol is not available, then the original <a
+      href="pdbviewer.html">internal pdb viewer</a> will be used as a
+    fallback.
   </p>
   <!-- <p>The following menu entries are provided for viewing structure data<br>
   <ul>
@@ -195,7 +195,7 @@
         </strong><em> Colours each residue in the structure with the colour
             of its corresponding residue in the associated sequence as
             rendered in the associated alignment views, including any
-            Uniprot sequence features or region colourings.<br />Pick
+            UniProt sequence features or region colourings.<br />Pick
             which of the associated alignment views are used to colour
             the structures using the <strong>View&#8594;Colour
               by ..</strong> sub menu.
@@ -218,8 +218,8 @@
             colourschemes.<br>
         </strong><em>The remaining entries apply the colourschemes available
             from the standard and user defined <a
-            href="../colourSchemes/index.html"
-          >amino acid colours</a>.
+            href="../colourSchemes/index.html">amino acid
+              colours</a>.
         </em></li>
       </ul></li>
     <li><strong>Jmol<br>
@@ -259,11 +259,10 @@
     Jmol scripting console.</p>
   <p>
     The state of each Jmol display is stored within <a
-      href="jalarchive.html"
-    >Jalview archives</a> as a Jmol state recovery script file. This means
-    that any Jmol visualization effects that you add beyond those
-    provided by Jalview will be able to be stored and recovered along
-    with the displayed alignments in Jalview.
+      href="jalarchive.html">Jalview archives</a> as a Jmol state
+    recovery script file. This means that any Jmol visualization effects
+    that you add beyond those provided by Jalview will be able to be
+    stored and recovered along with the displayed alignments in Jalview.
   </p>
   <p>
     <strong>More Information</strong>
@@ -272,8 +271,8 @@
     Jmol is a sophisticated program in its own right, with its own
     command console and scripting language. Only the essentials have
     been described here - the interested reader is referred to <a
-      href="http://jmol.sourceforge.net/docs/"
-    >Jmol's own comprehensive online documentation</a>.
+      href="http://jmol.sourceforge.net/docs/">Jmol's own
+      comprehensive online documentation</a>.
   </p>
   </p>
 </body>