X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Foverview.html;h=2a656a3457087b0a84b520b0b200520f4b1980ac;hb=e04bcd38992def511190a30f98cb3db3a720e0fc;hp=1f553e22942db37ef58fa79d82ea00de0c2fb46f;hpb=a8f483d04205bb8273ee311c12968b7e86d205fa;p=jalview.git diff --git a/help/html/features/overview.html b/help/html/features/overview.html index 1f553e2..2a656a3 100755 --- a/help/html/features/overview.html +++ b/help/html/features/overview.html @@ -1,30 +1,56 @@ -Overview Window + --> + +Overview Window + -

View→Overview window

-

Select the overview window menu item to get a navigable image of the whole alignment. -

-

The red box indicates the currently viewed region of the alignment, this - may be moved by clicking and dragging with the mouse.

-

-

 

+

+ View→Overview window +

+

Select the overview window menu item to get a navigable image + of the whole alignment. By default, gaps are shown as dark grey, in + the overview (since 2.10.2b1).

+

The red box indicates the currently viewed region of the + alignment, this may be moved by clicking and dragging with the + mouse.

+

Click anywhere else in the overview to centre the view on that + position

+

+

+ Hiding hidden regions in the overview +

+

+ Hidden sequences and columns are by default shown as dark-grey rows + and columns in the overview. Hidden regions can also be omitted + entirely (to make the Overview 'WYSIWIG') by Right-clicking + (or CMD-Clicking) to open the overview's popup menu.

+ The option to include/exclude hidden regions in the + overview was introduced in Jalview 2.10.2. + +

+ +

+

 

+ Previous to 2.10.2b1, gaps were white, and sequences shown as + dark grey unless coloured.