X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Foverview.html;h=6401fdd735bc949e76b650df99c1c1884551d440;hb=2b38dcf01ebc4ac100d99fee946a14c4b18f4693;hp=0a1d8b265f3f78cc2eccd03f0e72249f12bb7090;hpb=6fa9683bef52d6709abb81840681e4fa452cafe7;p=jalview.git diff --git a/help/html/features/overview.html b/help/html/features/overview.html index 0a1d8b2..6401fdd 100755 --- a/help/html/features/overview.html +++ b/help/html/features/overview.html @@ -1,12 +1,56 @@ - -
- -Select the overview window to get a navigable image of the whole alignment. -
-The window indicates the current viewable region of the alignment, this area - may be adjusted by clicking and dragging with the mouse.
-Note: It may not be possible to view very large alignments with the overview - window due to lack of application memory.
- - - + + + ++ View→Overview window +
+Select the overview window menu item to get a navigable image + of the whole alignment. By default, gaps are shown as dark grey, in + the overview (since 2.10.2b1).
+The red box indicates the currently viewed region of the + alignment, this may be moved by clicking and dragging with the + mouse.
+Click anywhere else in the overview to centre the view on that + position
+ ++ Hiding hidden regions in the overview +
+
+ Hidden sequences and columns are by default shown as dark-grey rows
+ and columns in the overview. Hidden regions can also be omitted
+ entirely (to make the Overview 'WYSIWIG') by Right-clicking
+ (or CMD-Clicking) to open the overview's popup menu.
+ The option to include/exclude hidden regions in the
+ overview was introduced in Jalview 2.10.2.
+
+
+ +
++ Previous to 2.10.2b1, gaps were white, and sequences shown as + dark grey unless coloured. + +