X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Foverview.html;h=6401fdd735bc949e76b650df99c1c1884551d440;hb=34ae1e91770fcaa071595ae302f23351e0bcb0ae;hp=4f265926f788cda8ca2dcebf5d4b7c16753dd05b;hpb=140b0d3f1d7a31d14cb02deb55214bbad44874be;p=jalview.git diff --git a/help/html/features/overview.html b/help/html/features/overview.html index 4f26592..6401fdd 100755 --- a/help/html/features/overview.html +++ b/help/html/features/overview.html @@ -27,18 +27,30 @@ View→Overview window

Select the overview window menu item to get a navigable image - of the whole alignment.

+ of the whole alignment. By default, gaps are shown as dark grey, in + the overview (since 2.10.2b1).

The red box indicates the currently viewed region of the alignment, this may be moved by clicking and dragging with the mouse.

-

Right-click (or CMD-Click) to open the - overview's popup menu. This provides an option to include hidden - regions in the overview (shown as dark-grey rows and columns).

+

Click anywhere else in the overview to centre the view on that + position

+

+

+ Hiding hidden regions in the overview +

+

+ Hidden sequences and columns are by default shown as dark-grey rows + and columns in the overview. Hidden regions can also be omitted + entirely (to make the Overview 'WYSIWIG') by Right-clicking + (or CMD-Clicking) to open the overview's popup menu.

The option to include/exclude hidden regions in the - overview was introduced in Jalview 2.10.2. + overview was introduced in Jalview 2.10.2. +

- + 1hdc.pfam example alignment

 

+ Previous to 2.10.2b1, gaps were white, and sequences shown as + dark grey unless coloured.