X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Foverview.html;h=6401fdd735bc949e76b650df99c1c1884551d440;hb=34ae1e91770fcaa071595ae302f23351e0bcb0ae;hp=b74c557c9e7a2b90fa5ebe21252b8bd11f7b6fe5;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git diff --git a/help/html/features/overview.html b/help/html/features/overview.html index b74c557..6401fdd 100755 --- a/help/html/features/overview.html +++ b/help/html/features/overview.html @@ -19,14 +19,38 @@ * along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. --> -Overview Window + +Overview Window + -

View→Overview window

-

Select the overview window menu item to get a navigable image of the whole alignment. -

-

The red box indicates the currently viewed region of the alignment, this - may be moved by clicking and dragging with the mouse.

-

-

 

+

+ View→Overview window +

+

Select the overview window menu item to get a navigable image + of the whole alignment. By default, gaps are shown as dark grey, in + the overview (since 2.10.2b1).

+

The red box indicates the currently viewed region of the + alignment, this may be moved by clicking and dragging with the + mouse.

+

Click anywhere else in the overview to centre the view on that + position

+

+

+ Hiding hidden regions in the overview +

+

+ Hidden sequences and columns are by default shown as dark-grey rows + and columns in the overview. Hidden regions can also be omitted + entirely (to make the Overview 'WYSIWIG') by Right-clicking + (or CMD-Clicking) to open the overview's popup menu.

+ The option to include/exclude hidden regions in the + overview was introduced in Jalview 2.10.2. + +

+ 1hdc.pfam example alignment +

+

 

+ Previous to 2.10.2b1, gaps were white, and sequences shown as + dark grey unless coloured.