X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Foverview.html;h=6401fdd735bc949e76b650df99c1c1884551d440;hb=b1e2aea95b3839a1a53f809c579666075cd3d348;hp=7181e3657bee106630409f2d23a8138b70ad1951;hpb=c53aeee9a688f68d64106a968876e542f701fbc6;p=jalview.git diff --git a/help/html/features/overview.html b/help/html/features/overview.html index 7181e36..6401fdd 100755 --- a/help/html/features/overview.html +++ b/help/html/features/overview.html @@ -1,29 +1,56 @@ -
View→Overview window
-Select the overview window menu item to get a navigable image of the whole alignment. -
-The red box indicates the currently viewed region of the alignment, this - may be moved by clicking and dragging with the mouse.
-+
+ View→Overview window +
+Select the overview window menu item to get a navigable image + of the whole alignment. By default, gaps are shown as dark grey, in + the overview (since 2.10.2b1).
+The red box indicates the currently viewed region of the + alignment, this may be moved by clicking and dragging with the + mouse.
+Click anywhere else in the overview to centre the view on that + position
+ ++ Hiding hidden regions in the overview +
+
+ Hidden sequences and columns are by default shown as dark-grey rows
+ and columns in the overview. Hidden regions can also be omitted
+ entirely (to make the Overview 'WYSIWIG') by Right-clicking
+ (or CMD-Clicking) to open the overview's popup menu.
+ The option to include/exclude hidden regions in the
+ overview was introduced in Jalview 2.10.2.
+
+
+
+
+ Previous to 2.10.2b1, gaps were white, and sequences shown as + dark grey unless coloured.