X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fpdbsequencefetcher.html;h=925127728d8d5aeaea1ae142cdd812e798672193;hb=2b8c0785318a3528e1876e8e2dd48b7d831eae69;hp=968d40c2ddd191697dec34d698505c46fcc8a635;hpb=838e4f91d4a53dd315640dbc9ff6ef7a815ee576;p=jalview.git

diff --git a/help/html/features/pdbsequencefetcher.html b/help/html/features/pdbsequencefetcher.html
index 968d40c..9251277 100644
--- a/help/html/features/pdbsequencefetcher.html
+++ b/help/html/features/pdbsequencefetcher.html
@@ -1,7 +1,7 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -37,37 +37,40 @@
   <p>
     To open the PDB Sequence Fetcher, select PDB as the database from
     any <a href="seqfetch.html">Sequence Fetcher</a> dialog (opened <em>via</em>
-    <strong>&quot;File &#8594;Fetch Sequences&quot;</strong>).
+    <strong>&quot;File &#8594;Fetch Sequences&quot;</strong>). 
   </p>
   <img src="pdbseqfetcher.png" align="left"
-    alt="PDB sequence fetcher (introduced in Jalview 2.9)"
-  />
+    alt="PDB sequence fetcher (introduced in Jalview 2.9)" />
 
   <p>
-    <strong>Searching the PDB Database</strong>
+    <a name="pdbfts"><strong>Searching the PDB Database</strong></a>
   </p>
+  <p>To search the PDB, begin typing in the text box. If the
+    'autosearch' checkbox is enabled, then the results of your query
+    will be automatically updated and shown in the search results tab;
+    otherwise, press return to update the results. To access previous
+    searches, press the down-arrow or click the drop down menu icon at
+    the side of the search box. If you just want to paste in a list of
+    IDs, the 'Retrieve IDs' tab provides a batch-retrieval interface.</p>
   <p>
-    To search the PDB, begin typing in the text box. The results of your
-    query are shown in the search results tab, which updates every time
-    you type in the search text box. You can sort results according to
-    the displayed columns, and select entries with the mouse and
-    keyboard. Once you have selected one or more entries, hit the <strong>OK</strong>
-    button to retrieve and view them in Jalview.
+    You can sort results according to the displayed columns, and select
+    entries with the mouse and keyboard. Once you have selected one or
+    more entries, hit the <strong>OK</strong> button to retrieve and
+    view them in Jalview.
   </p>
   <p>
   <ul>
-    <li><strong>Searching a specific PDB field</strong><br />If you
-      want to find structures based on a specific PDB metadata field,
-      you can select it from the drop-down menu.</li>
+    <li><strong>Searching a specific PDB field</strong><br />If
+      you want to find structures based on a specific PDB metadata
+      field, you can select it from the drop-down menu.</li>
     <li><strong>Retrieving a unique chain for a PDB entry</strong><br>To
       retrieve a specific chain for a PDB entry, append the PDB ID with
       a colon followed by the chain code in the search box.<br /> e.g
       1xyz:A</li>
 
     <li><strong>Bulk PDB retrieval</strong><br>Multiple PDB
-      IDs can be specified by separating them with a semi-colon.<br />
-      e.g. 1xyz;2xyz;3xyz<br />Hitting Return or OK will automatically
-      fetch those IDs, like the default Sequence Fetcher interface.</li>
+      IDs can be specified for retrieval via the 
+      <strong>Retrieve IDs</strong> tab.</li>
 
     <li><strong>Wild card searching</strong><br>The following
       wild cards are supported by the EMBL-EBI PDBe query service:
