X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fpdbsequencefetcher.html;h=bb63bed722df52b12e23e44b06ce3404c4f270f9;hb=0bee8aadc22e41e4793db251a7d37a839bd77db8;hp=1db7176966f3dc892636681e267b1868a2facbaa;hpb=e50faa2d7e8c3d056955be397920c17bcf99bcf7;p=jalview.git diff --git a/help/html/features/pdbsequencefetcher.html b/help/html/features/pdbsequencefetcher.html index 1db7176..bb63bed 100644 --- a/help/html/features/pdbsequencefetcher.html +++ b/help/html/features/pdbsequencefetcher.html @@ -24,38 +24,53 @@
- The PDB Sequence Fetcher -Jalview provides a specialised interface that allows fast and efficient discovery and retrieval of data from the PDB - database, based on the EMBL-EBI's PDBe BioSOLR query interface. It allows interactive querying of PDB metadata with free text and structured queries, so structures can be located without prior knowledge of their database accessions, - or via manual cross-referencing with other bioinformatics websites.
+ The PDB Sequence Fetcher- To open the PDB Sequence Fetcher, select PDB as the database from any Sequence Fetcher dialog (opened via "File - →Fetch Sequences"). + Jalview provides a specialised interface that allows fast and + efficient discovery and retrieval of data from the PDB database, + based on the EMBL-EBI's PDBe BioSOLR query interface. It allows + interactive querying of PDB metadata with free text and structured + queries, so structures can be located without prior knowledge of + their database accessions, or via manual cross-referencing + with other bioinformatics websites.
-+ To open the PDB Sequence Fetcher, select PDB as the database from + any Sequence Fetcher dialog (opened via + "File →Fetch Sequences"). +
+Searching the PDB Database
- To search the PDB, begin typing in the text box. The results of your - query are shown in the search results tab, which updates every time - you type in the search text box. You can sort results according to - the displayed columns, and select entries with the mouse and - keyboard. Once you have selected one or more entries, hit the OK - button to retrieve and view them in Jalview. + Searching the PDB Database +
+To search the PDB, begin typing in the text box. If the + 'autosearch' checkbox is enabled, then the results of your query + will be automatically updated and shown in the search results tab; + otherwise, press return to update the results. To access previous + searches, press the down-arrow or click the drop down menu icon at + the side of the search box. If you just want to paste in a list of + IDs, the 'Retrieve IDs' tab provides a batch-retrieval interface.
++ You can sort results according to the displayed columns, and select + entries with the mouse and keyboard. Once you have selected one or + more entries, hit the OK button to retrieve and + view them in Jalview.
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+
- Customising The PDB Sequence Fetcher
To change the - displayed meta-data in the search result, click the 'Configure - Displayed Columns' tab, and select the fields you'd like displayed. - These fields can also be configured - via the Structure tab of the Jalview Desktop Preferences. +
+ Customising The PDB Sequence Fetcher +
++ To change the displayed meta-data in the search result, click the + 'Configure Displayed Columns' tab, and select the fields you'd like + displayed. These fields can also be configured via the + Structure tab of the Jalview + Desktop Preferences.
The PDB Sequence Fetcher interface was introduced in