From Jalview 2.9 a specialised interface was introduced for +
From Jalview 2.9, a specialised interface was introduced for fast and efficient discovery/retrieval of sequence data from the PDB database. The introduced interface enables live querying of PDB data on-the-fly thereby eliminating the need to memorise database accession or to manually cross-reference other bioinformatics websites before retrieving - sequence data in Jalview. The underlying technology is provided by + sequence data in Jalview. The underlying infrastructure is provided by EBI and is based on Apache Solr which is a text based search engine.
- The PDB Sequence Fetcher interface can be opened by selecting PDB - as the choice database from the 'Select Database - Retrieval Source' interface of Sequence - Fetcher. + The PDB Sequence Fetcher interface can be accessed from "File →Fetch Sequence(s) →Select Database →PDB" click the ok button after selecting PDB from the 'Select Database + Retrieval Source' interface.
Use the drop-down menu to select a specific field to search by in the PDB database, the default - option is 'ALL'.
+ option is 'ALL'.Furthermore, the PDB search interface also provides the following functionalities:
Customising displayed meta-data
To change
- the displayed meta-data in the search result, click the 'Configure
- Displayed Columns' tab, then tick off the options wanted.
+ the displayed meta-data in the search result, click the 'Configure
+ Displayed Columns' tab, then tick off the options wanted.
Importing Sequence
After querying the PDB