X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fpdbviewer.html;h=2bfaeb652cce9d93cd6982e2292b651984e90baf;hb=ab43013b7e357b84b4abade0dba949668dfb2a0e;hp=9e1e6e5275cfc34edf693f73e51de7d0f33c0a5c;hpb=bb5c8d98be1c4965b1a43b97f05b07e9ceb10343;p=jalview.git diff --git a/help/html/features/pdbviewer.html b/help/html/features/pdbviewer.html index 9e1e6e5..2bfaeb6 100755 --- a/help/html/features/pdbviewer.html +++ b/help/html/features/pdbviewer.html @@ -1,13 +1,41 @@ + PDB Viewer +

The Jalview internal PDB Viewer
+Since Jalview 2.3, the Jmol PDB Viewer is +the main method for viewing PDB +structures. The documentation below concerns the original Jalview +PDB viewer, which is only used in situations where Jmol is unavailable +or cannot operate.

The PDB Viewer Window

This interactive structure viewing window is opened by selecting -the "Sequence→View PDB entry:" entry in -the sequence id pop-up menu. This -can only be done for sequences which have an associated +entries from the "Structure→" submenu + of the sequence + id pop-up menu. The internal PDB viewer is not able to show + superpositions, so no other options are provided. Structures can only + be viewed for sequences which have an associated PDB structure, and the PDB Viewer will only be associated with the particular alignment view from which it was opened.

Controls