X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fsearch.html;h=72e5bdf2d4aa05b440162721233cbf4ecd93da6f;hb=4353b5fc310340ece7067b3872235ab7f844c8c2;hp=484d93fbb0a77a58f71676cc928198a76c99ad4f;hpb=e0a45c41828a768c21554df80e95b56daae4906d;p=jalview.git

diff --git a/help/html/features/search.html b/help/html/features/search.html
index 484d93f..72e5bdf 100755
--- a/help/html/features/search.html
+++ b/help/html/features/search.html
@@ -24,7 +24,7 @@
 <style type="text/css">
 <!--
 td {
-	text-align: center;
+  text-align: center;
 }
 -->
 </style>
@@ -36,8 +36,8 @@ td {
   </p>
   <p>The search box is displayed by pressing Control and F or
     selecting &quot;Find...&quot; from the &quot;Search&quot; menu.</p>
-  <img src="search.gif" width="339" height="110">
-  <p>&quot;Find next&quot; will find the next occurence of the
+  <img src="search.png" width="398" height="124">
+  <p>&quot;Find next&quot; will find the next occurrence of the
     specified and adjust the alignment window view to show it, and
     &quot;Find all&quot; highlights all matches for a pattern. The
     &quot;New Feature&quot; is a quick way to highlight and group
@@ -48,7 +48,10 @@ td {
       of posix and perl style regex - see below for a summary)</li>
     <li>Gaps are ignored when matching the query to the sequences
       in the alignment.</li>
-    <li>The search is applied to both sequences and their IDs.</li>
+    <li>The search is applied to both sequences and their IDs, and
+      optionally also to the description string (<em>since Jalview
+        2.10</em>)
+    </li>
     <li>If a region is selected, then search will <strong>only</strong>
       be performed on that region.
     </li>
@@ -56,7 +59,9 @@ td {
       &quot;Escape&quot; key.</li>
     <li>Tick the &quot;Match Case&quot; box to perform a case
       sensitive search.</li>
-      <li>To access a <a ref="#queryhistory">previously used query</a> press the down arrow or click on the button on the right of the text field. 
+    <li>To access a <a ref="#queryhistory">previously used
+        query</a> press the down arrow or click on the button on the right
+      of the text field.
   </ul>
   <p>
     <strong>Creating Features from Search Results</strong>
@@ -78,7 +83,7 @@ td {
     highlighted region.
   </p>
   <p>
-  
+
     <strong>A quick Regular Expression Guide</strong>
   </p>
   <p>A regular expression is not just a simple text query - although
@@ -143,13 +148,26 @@ td {
         max number of times</td>
     </tr>
   </table>
-  <p><a name="queryhistory"/><strong>Search History</strong></p>
-  <p>A record of all the recent queries made via the Find dialog are stored along with your Jalview user preferences. To open the search history, click on the button to the right of the query field, or press the down arrow key.</p>
-  <img src="searchhist.png" width="404" height="185" align="left"/>
-  <p>The search history keeps up to 99 queries by default. To clear the history, or modify the size of the history, right-click the text box.</p>
-  <img  src="searchclearhist.png" width="402" height="121" align="left"/>
-  <p><strong>Other dialogs that provide a query history</strong></p>
-  <p>Jalview's <a href="uniprotsequencefetcher.html">Uniprot</a> and <a href="pdbsequencefetcher.html">PDB</a> free text database search dialogs also provide a query history.</p>
+  <p>
+    <a name="queryhistory" /><strong>Search History</strong>
+  </p>
+  <p>A record of all the recent queries made via the Find dialog are
+    stored along with your Jalview user preferences. To open the search
+    history, click on the button to the right of the query field, or
+    press the down arrow key.</p>
+  <img src="searchhist.png" width="404" height="185" align="left" />
+  <p>The search history keeps up to 99 queries by default. To clear
+    the history, or modify the size of the history, right-click the text
+    box.</p>
+  <img src="searchclearhist.png" width="402" height="121" align="left" />
+  <p>
+    <strong>Other dialogs that provide a query history</strong>
+  </p>
+  <p>
+    Jalview's <a href="uniprotsequencefetcher.html">Uniprot</a> and <a
+      href="pdbsequencefetcher.html">PDB</a> free text database search
+    dialogs also provide a query history.
+  </p>
   <em>The query histories were introduced in Jalview 2.10.2</em>
 </body>
 </html>