X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fseqfeatures.html;h=eeb63f6f5460a8d5733bb7ec6ede0c80042dcf90;hb=ce7259404dbb5bbeeb296d32b6a2543b30a7c924;hp=b5e644f92b09d0a4fef5a048ea6b94c311b7e8ae;hpb=838e4f91d4a53dd315640dbc9ff6ef7a815ee576;p=jalview.git

diff --git a/help/html/features/seqfeatures.html b/help/html/features/seqfeatures.html
index b5e644f..eeb63f6 100755
--- a/help/html/features/seqfeatures.html
+++ b/help/html/features/seqfeatures.html
@@ -1,7 +1,7 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -29,7 +29,7 @@
   <p>
     Jalview can colour parts of a sequence based on the presence of
     sequence features - which may be retrieved from database records
-    (such as Uniprot), the result of <a href="search.html">sequence
+    (such as UniProt), the result of <a href="search.html">sequence
       motif searches</a> or simply read from a <a href="featuresFormat.html">sequence
       features file</a>. You can also <a href="creatinFeatures.html">create
       features</a> from the results of searches or the current selection,
@@ -42,11 +42,11 @@
   <p>
     By default, Jalview will assign a color to each feature based on its
     type. These colours can be changed from the <a
-      href="featuresettings.html"
-    >feature settings</a> and <a href="editingFeatures.html">amend
-      features</a> dialog boxes. Since Jalview 2.5, it is also possible to
-    define <a href="featureschemes.html">feature colourschemes</a> to
-    shade features based on their associated scores or text labels.
+      href="featuresettings.html">feature settings</a> and <a
+      href="editingFeatures.html">amend features</a> dialog boxes. Since
+    Jalview 2.5, it is also possible to define <a
+      href="featureschemes.html">feature colourschemes</a> to shade
+    features based on their associated scores or text labels.
   </p>
   <p>
     <strong>Sequence Feature Groups</strong>
@@ -54,10 +54,9 @@
   <p>
     Since Jalview 2.08, sequence features assigned to a sequence can be
     organised into groups, which may indicate that the features were all
-    retrieved from the same database (such as Uniprot features), or
+    retrieved from the same database (such as UniProt features), or
     generated by the same analysis process (as might be specified in a <a
-      href="featuresFormat.html"
-    >sequence features file</a>).
+      href="featuresFormat.html">sequence features file</a>).
   </p>
   <p>
     <strong>Sequence Feature Inheritance</strong>
@@ -85,13 +84,10 @@
   <p>
     Once sequence features have been loaded, their display can be fully
     controlled using the alignment window's <a
-      href="featuresettings.html"
-    >Sequence Feature Settings</a> dialog box. Feature colour schemes and
-    display parameters are unique to a particular alignment, so it is
-    possible to colour the same sequence features differently in
-    different alignment views.<br> Since Jalview 2.1, it is
-    possible to add <a href="dassettings.html">DAS features</a> to an
-    alignment via the DAS tabbed pane of the feature settings window.
+      href="featuresettings.html">Sequence Feature Settings</a>
+    dialog box. Feature colour schemes and display parameters are unique
+    to a particular alignment, so it is possible to colour the same
+    sequence features differently in different alignment views.
   </p>
   <p>
     <strong>View&#8594;Sequence ID Tooltip&#8594;Show
@@ -105,8 +101,8 @@
     Precalculated Sequence Features may be added to an alignment from
     the command line, drag and drop, or from the &quot;File&#8594;Load
     Features / Annotations&quot; menu item. See the <a
-      href="featuresFormat.html"
-    >Features File Format</a> for more details.
+      href="featuresFormat.html">Features File Format</a> for more
+    details.
   </p>
 </body>
 </html>
