By default, Jalview will assign a color to each feature based on its type. These colours can be changed from the feature settings and amend - features dialog boxes. Since Jalview 2.5, it is also possible to - define feature colourschemes to - shade features based on their associated scores or text labels. + href="featuresettings.html">feature settings and amend features dialog boxes. Since + Jalview 2.5, it is also possible to define feature colourschemes to shade + features based on their associated scores or text labels.
Sequence Feature Groups @@ -56,8 +56,7 @@ organised into groups, which may indicate that the features were all retrieved from the same database (such as UniProt features), or generated by the same analysis process (as might be specified in a sequence features file). + href="featuresFormat.html">sequence features file).
Sequence Feature Inheritance @@ -85,13 +84,10 @@
Once sequence features have been loaded, their display can be fully
controlled using the alignment window's Sequence Feature Settings dialog box. Feature colour schemes and
- display parameters are unique to a particular alignment, so it is
- possible to colour the same sequence features differently in
- different alignment views.
Since Jalview 2.1, it is
- possible to add DAS features to an
- alignment via the DAS tabbed pane of the feature settings window.
+ href="featuresettings.html">Sequence Feature Settings
+ dialog box. Feature colour schemes and display parameters are unique
+ to a particular alignment, so it is possible to colour the same
+ sequence features differently in different alignment views.
View→Sequence ID Tooltip→Show @@ -105,8 +101,8 @@ Precalculated Sequence Features may be added to an alignment from the command line, drag and drop, or from the "File→Load Features / Annotations" menu item. See the Features File Format for more details. + href="featuresFormat.html">Features File Format for more + details.