X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fseqmappings.html;fp=help%2Fhtml%2Ffeatures%2Fseqmappings.html;h=46fcd5956fe6d6787c2df144f098c0c66ee689b5;hb=7fd5a3b7a544114fa9e867fb4088a4b0b1ee9871;hp=0000000000000000000000000000000000000000;hpb=1616782823edaf3819b8bbb2930bd36a31a2e00a;p=jalview.git diff --git a/help/html/features/seqmappings.html b/help/html/features/seqmappings.html new file mode 100644 index 0000000..46fcd59 --- /dev/null +++ b/help/html/features/seqmappings.html @@ -0,0 +1,22 @@ + + +Mapping Between Different Sequences + + +

Mapping Between Different Sequences

+

A new feature in Jalview 2.8 is the ability to map +between sequences in different domains, based on alignment, +or by the use of explicit mappings provided by databases. +

+

The most familiar mapping is the one used to identify +the coordinates corresponding to a displayed sequence when +viewing a PDB file associated with a sequence (see +"Viewing PDB Files" +for more information.

+

The newest form of mapping supported by Jalview is the +correspondence between DNA and protein sequences. This mapping +can be imported directly from EMBL and EMBLCDS database records +retrieved by the Sequence Fetcher, +or by the definition of coding regions. + + \ No newline at end of file