Mapping Between Different Sequences
-A new feature in Jalview 2.3 is the ability to map between sequences in different - domains, based on alignment, or by the use of explicit mappings provided by - databases.
-The most familiar mapping is the one used to identify -the coordinates corresponding to a displayed sequence when -viewing a PDB file associated with a sequence (see -"Viewing PDB Files" -for more information.
-The newest form of mapping supported by Jalview is the -correspondence between DNA and protein sequences. This mapping -can be imported directly from EMBL and EMBLCDS database records -retrieved by the Sequence Fetcher, -and allows sequence features to be mapped directly from Uniprot -das sources to their coding region on EMBL sequence records. +
+ Mapping Between Different Sequences +
+A new feature in Jalview 2.3 is the ability to map between + sequences in different domains, based on alignment, or by the use of + explicit mappings provided by databases.
++ The most familiar mapping is the one used to identify the + coordinates corresponding to a displayed sequence when viewing a PDB + file associated with a sequence (see "Viewing + PDB Files" for more information. +
++ The newest form of mapping supported by Jalview is the + correspondence between DNA and protein sequences. This mapping can + be imported directly from EMBL and EMBLCDS database records + retrieved by the Sequence Fetcher, and + allows sequence features to be mapped directly from Uniprot das + sources to their coding region on EMBL sequence records. +
+In Jalview 2.9.1 SIFTS Mapping was added as a better means for explicitly identifying the coordinates corresponding to a displayed sequence when viewing a PDB structure associated with a sequence