X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fseqmappings.html;h=808286c4553490d45a6883063ef57a20bfc0587b;hb=153dd62dc91da13ae732600e6ea55ddbe15eab39;hp=66edaf9c3e5243d224a5ac331ba517768e2ebf4e;hpb=6ab4ef1cc71ff9d28a21a139db69e4a8351a3fb5;p=jalview.git diff --git a/help/html/features/seqmappings.html b/help/html/features/seqmappings.html index 66edaf9..808286c 100644 --- a/help/html/features/seqmappings.html +++ b/help/html/features/seqmappings.html @@ -1,6 +1,6 @@ + +Mapping Between Different Sequences + + +

Mapping Between Different Sequences

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A new feature in Jalview 2.3 is the ability to map between sequences in different + domains, based on alignment, or by the use of explicit mappings provided by + databases.

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The most familiar mapping is the one used to identify +the coordinates corresponding to a displayed sequence when +viewing a PDB file associated with a sequence (see +"Viewing PDB Files" +for more information.

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The newest form of mapping supported by Jalview is the +correspondence between DNA and protein sequences. This mapping +can be imported directly from EMBL and EMBLCDS database records +retrieved by the Sequence Fetcher, +and allows sequence features to be mapped directly from Uniprot +das sources to their coding region on EMBL sequence records. + +