X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fseqmappings.html;h=ce4170231c6938acb341cb970cf023477dafe2ac;hb=06f2d682b8b68f630596e5ffa503fe0a32388002;hp=66edaf9c3e5243d224a5ac331ba517768e2ebf4e;hpb=6ab4ef1cc71ff9d28a21a139db69e4a8351a3fb5;p=jalview.git diff --git a/help/html/features/seqmappings.html b/help/html/features/seqmappings.html index 66edaf9..ce41702 100644 --- a/help/html/features/seqmappings.html +++ b/help/html/features/seqmappings.html @@ -1,18 +1,50 @@ - - + + + +Mapping Between Different Sequences + + +

+ Mapping Between Different Sequences +

+ +

A new feature in Jalview 2.3 is the ability to map between + sequences in different domains, based on alignment, or by the use of + explicit mappings provided by databases.

+

+ The most familiar mapping is the one used to identify the + coordinates corresponding to a displayed sequence when viewing a PDB + file associated with a sequence (see "Viewing + PDB Files" for more information. +

+

+ The newest form of mapping supported by Jalview is the + correspondence between DNA and protein sequences. This mapping can + be imported directly from EMBL and EMBLCDS database records + retrieved by the Sequence Fetcher, and + allows sequence features to be mapped directly from UniProt das + sources to their coding region on EMBL sequence records. +

+ SIFTS Mapping between PDB and + UniProt data was introduced in Jalview 2.10 + +