X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fstructurechooser.html;h=785c42978170887d5250aaa472945b1b8c421cb5;hb=6f9d7b98943ecba292a9c0dd65b30c4d8150c98f;hp=30825c59a899bb188d6d1edab6982720219d5b77;hpb=17e77c3f2949a0729322b4a8d907f3f34b6a9914;p=jalview.git diff --git a/help/html/features/structurechooser.html b/help/html/features/structurechooser.html index 30825c5..785c429 100644 --- a/help/html/features/structurechooser.html +++ b/help/html/features/structurechooser.html @@ -1,7 +1,7 @@ -
The screenshot above shows the Structure Chooser interface - along with the meta-data of auto-discovered structures for the - sample alignment. Note however that if no structures were - auto-discovered, a different interface for manual association will - be invoked as seen in the screenshot below. +
The screenshot above shows the Structure Chooser displayed after + selecting all the sequences in the Jalview example project. If no + structures were auto-discovered, options for manually associating + PDB records will be shown (see below).

+ Exploration of meta-data for available structures +

Information on each structure available is displayed in columns + in the dialog box. By default, only the title, resolution and PDB + identifier are shown, but many more are provided by the PDBe. To + configure which ones are displayed, select the 'Configure Displayed + Columns' tab and tick the columns which you want to see.

+ style="width: 464px; height: 173px;"> +
Manual selection/association of PDB files with Sequences

To manually associate PDB files with a sequence, select any of - the follwing options listed below from the drop-down menu in the - interface: +

To manually associate PDB files with a sequence, select 'From + File', or 'Enter PDB Id' from the drop-down menu:

From File - You can load a PDB file from - the local machine or network and associate it with the selected - sequence. PDB files associated in this way will also be saved in - the Jalview Archive file.
Enter PDB Id - Jalview will use the PDB - Rest API, provided by the EBI, to fetch the PDB file with the - entered Id.
Cached PDB Entries - You can view PDB - structures which have previously been downloaded/viewed using this - option. Jalview caches previously downloaded PDB entries in the - computer memory. However, if the project is saved before exiting - Jalview, Jalview will serialize the cached entries to the file - system.
From File - allows you to load a PDB file + from the local machine or network and associate it with the + selected sequence. PDB files associated in this way will also be + saved in the Jalview Archive file.
Enter PDB Id - allows you specify a PDB ID + for your sequence. The PDB Rest API, provided by EMBL-EBI, is used + to validate and fetch structure data.