X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fstructurechooser.html;h=a3fffa8a3cfdee1c35023fc89ac8686331fa5288;hb=dbd9a22891bded630623f94d78eee8a39f387051;hp=039fdb068a536bb7aa387a0f546942b73dace06b;hpb=c248aad32a357e7440b2e5ab3ea8c5fddbb26b84;p=jalview.git
diff --git a/help/html/features/structurechooser.html b/help/html/features/structurechooser.html
index 039fdb0..a3fffa8 100644
--- a/help/html/features/structurechooser.html
+++ b/help/html/features/structurechooser.html
@@ -1,7 +1,7 @@
-
The screenshot above shows the Structure Chooser interface
- along with the meta-data of auto-discovered structures for the sample
- alignment. Note however that if no structures were auto-discovered, a
- different interface for manual association will be invoked as seen in
- the screenshot below.
-
- 
-
- Manual selection/association of PDB files with Sequences
-
- To manually associate PDB files with a sequence, select any of
- the follwing options listed below from the drop-down menu in the
- interface:
-
- - From File - You can load a PDB file from the
- local machine or network and associate it with the selected sequence.
- PDB files associated in this way will also be saved in the Jalview Archive file.
- - Enter PDB Id - Jalview will use the PDB Rest
- API, provided by the EBI, to fetch the PDB file with the entered Id.
-
- - Cached PDB Entries - You can view PDB structures which have previously been downloaded/viewed using this option. Jalview caches previously downloaded PDB entries in the computer memory. However, if the project is saved before exiting Jalview, Jalview will serialize the cached entries to the file system.
-
+
The screenshot above shows the Structure Chooser interface
+ along with the meta-data of auto-discovered structures for the
+ sample alignment. Note however that if no structures were
+ auto-discovered, a different interface for manual association will
+ be invoked as seen in the screenshot below.
+
+
+
+ Manual selection/association of PDB files with
+ Sequences
+
+ To manually associate PDB files with a sequence, select any of
+ the follwing options listed below from the drop-down menu in the
+ interface:
+
+ - From File - You can load a PDB file from
+ the local machine or network and associate it with the selected
+ sequence. PDB files associated in this way will also be saved in
+ the Jalview Archive file.
+ - Enter PDB Id - Jalview will use the PDB
+ Rest API, provided by the EBI, to fetch the PDB file with the
+ entered Id.
+ - Cached PDB Entries - You can view PDB
+ structures which have previously been downloaded/viewed using this
+ option. Jalview caches previously downloaded PDB entries in the
+ computer memory. However, if the project is saved before exiting
+ Jalview, Jalview will serialize the cached entries to the file
+ system.
+
-
- The Structure Chooser interface was introduced in Jalview 2.9.
-
-
+
+ The Structure Chooser interface was introduced in Jalview
+ 2.9.
+