+
+ Field |
+ Example |
+ Description |
+
+
+ accession |
+ accession:P62988 |
+ Lists all entries with the primary or secondary accession
+ number P62988. |
+
+
+ active |
+ active:no |
+ Lists all obsolete entries. |
+
+
+ annotation |
+
+ annotation:(type:non-positional)
+ annotation:(type:positional) annotation:(type:mod_res
+ "Pyrrolidone carboxylic acid" evidence:experimental)
+ |
+ Lists all entries with:
+
+ - any general annotation (comments [CC])
+ - any sequence annotation (features [FT])
+ - at least one amino acid modified with a Pyrrolidone
+ carboxylic acid group
+
+ |
+
+
+ author |
+ author:ashburner |
+ Lists all entries with at least one reference co-authored
+ by Michael Ashburner. |
+
+
+ cdantigen |
+ cdantigen:CD233 |
+ Lists all entries whose cluster of differentiation number
+ is CD233. |
+
+
+ citation |
+
+ citation:("intracellular structural proteins")
+ citation:(author:ashburner journal:nature) citation:9169874
+ |
+ Lists all entries with a literature citation:
+
+ - containing the phrase "intracellular structural
+ proteins" in either title or abstract
+ - co-authored by Michael Ashburner and published in
+ Nature
+ - with the PubMed identifier 9169874
+
+ |
+
+
+ cluster |
+ cluster:UniRef90_A5YMT3 |
+ Lists all entries in the UniRef 90% identity cluster
+ whose representative sequence is UniProtKB entry A5YMT3. |
+
+
+ count |
+
+ annotation:(type:transmem count:5)
+ annotation:(type:transmem count:[5 TO *])
+ annotation:(type:cofactor count:[3 TO *])
+ |
+ Lists all entries with:
+
+ - exactly 5 transmembrane regions
+ - 5 or more transmembrane regions
+ - 3 or more Cofactor comments
+
+ |
+
+
+ created |
+
+ created:[20121001 TO *] reviewed:yes AND
+ created:[current TO *]
+ |
+ Lists all entries created since October 1st 2012.
Lists all new UniProtKB/Swiss-Prot entries in the last release.
- |
-
-
- database |
-
-
- database:(type:pfam)
-
- database:(type:pdb 1aut)
-
- |
-
- Lists all entries with:
-
- - a cross-reference to the Pfam database
- - a cross-reference to the PDB database entry 1aut
-
-
- |
-
-
- domain |
-
-
- domain:VWFA
-
- |
-
- Lists all entries with a Von Willebrand factor type A domain described
- in the 'Family and Domains' section.
- |
-
-
- ec |
-
-
- ec:3.2.1.23
-
- |
-
- Lists all beta-galactosidases.
- |
-
-
- evidence |
-
-
- annotation:(type:signal evidence:ECO_0000269)
- (type:mod_res phosphoserine evidence:ECO_0000269)
- annotation:(type:function AND evidence:ECO_0000255)
-
- |
- Lists all entries with:
-
- - a signal sequence whose positions have been experimentally proven
- - experimentally proven phosphoserine sites
- - a function manually asserted according to rules
-
- |
-
-
- family |
-
-
- family:serpin
-
- |
-
- Lists all entries belonging to the Serpin family of proteins.
- |
-
-
- fragment |
-
-
- fragment:yes
-
- |
-
- Lists all entries with an incomplete sequence.
- |
-
+
+
+
+ database |
+
+ database:(type:pfam) database:(type:pdb 1aut)
+ |
+ Lists all entries with:
+
+ - a cross-reference to the Pfam database
+ - a cross-reference to the PDB database entry 1aut
+
+
+ |
+
+
+ domain |
+ domain:VWFA |
+ Lists all entries with a Von Willebrand factor type A
+ domain described in the 'Family and Domains' section. |
+
+
+ ec |
+ ec:3.2.1.23 |
+ Lists all beta-galactosidases. |
+
+
+ evidence |
+
+ annotation:(type:signal evidence:ECO_0000269)
+ (type:mod_res phosphoserine evidence:ECO_0000269)
+ annotation:(type:function AND evidence:ECO_0000255)
+ |
+ Lists all entries with:
+
+ - a signal sequence whose positions have been
+ experimentally proven
+ - experimentally proven phosphoserine sites
+ - a function manually asserted according to rules
+
+ |
+
+
+ family |
+ family:serpin |
+ Lists all entries belonging to the Serpin family of
+ proteins. |
+
+
+ fragment |
+ fragment:yes |
+ Lists all entries with an incomplete sequence. |
+
+
+
+ gene |
+ gene:HSPC233 |
+ Lists all entries for proteins encoded by gene HSPC233. |
+
+
+ go |
+
+ go:cytoskeleton go:0015629
+ |
+ Lists all entries associated with:
+
+ - a GO term containing the word "cytoskeleton"
+ - the GO term Actin cytoskeleton and any subclasses
+
+ |
+
+
+ host |
+
+ host:mouse host:10090 host:40674
+ |
+ Lists all entries for viruses infecting:
+
+ - organisms with a name containing the word "mouse"
+ - Mus musculus (Mouse)
+ - all mammals (all taxa classified under the taxonomy
+ node for Mammalia)
+
+ |
+
+
+ id |
+ id:P00750 |
+ Returns the entry with the primary accession number
+ P00750. |
+
+
+ inn |
+ inn:Anakinra |
+ Lists all entries whose "International Nonproprietary
+ Name" is Anakinra. |
+
+
+ interactor |
+ interactor:P00520 |
+ Lists all entries describing interactions with the
+ protein described by entry P00520. |
+
+
+ keyword |
+ keyword:toxin |
+ Lists all entries associated with the keyword Toxin. |
+
+
+ length |
+ length:[500 TO 700] |
+ Lists all entries describing sequences of length between
+ 500 and 700 residues. |
+
+
+ lineage |
+ |
+ This field is a synonym for the field taxonomy .
+ |
+
+
+ mass |
+ mass:[500000 TO *] |
+ Lists all entries describing sequences with a mass of at
+ least 500,000 Da. |
+
+
+ method |
+
+ method:maldi method:xray
+ |
+ Lists all entries for proteins identified by:
+ matrix-assisted laser desorption/ionization (MALDI),
+ crystallography (X-Ray). The method field searches
+ names of physico-chemical identification methods in the
+ 'Biophysicochemical properties' subsection of the 'Function'
+ section, the 'Publications' and 'Cross-references' sections.
+ |
+
+
+ mnemonic |
+ mnemonic:ATP6_HUMAN |
+ Lists all entries with entry name (ID) ATP6_HUMAN.
+ Searches also obsolete entry names. |
+
+
+ modified |
+
+ modified:[20120101 TO 20120301] reviewed:yes AND
+ modified:[current TO *]
+ |
+ Lists all entries that were last modified between January
+ and March 2012. Lists all UniProtKB/Swiss-Prot entries
+ modified in the last release.
+ |
+
+
+ name |
+ name:"prion protein" |
+ Lists all entries for prion proteins. |
+
+
+ organelle |
+ organelle:Mitochondrion |
+ Lists all entries for proteins encoded by a gene of the
+ mitochondrial chromosome. |
+
+
+ organism |
+
+ organism:"Ovis aries" organism:9940
+ organism:sheep
+ |
+ Lists all entries for proteins expressed in sheep (first
+ 2 examples) and organisms whose name contains the term "sheep".
+ |
+
-
- gene |
-
-
- gene:HSPC233
-
- |
-
- Lists all entries for proteins encoded by gene HSPC233.
- |
-
-
- go |
-
-
- go:cytoskeleton
-
- go:0015629
-
- |
-
- Lists all entries associated with:
-
- - a GO term containing the word "cytoskeleton"
- - the GO term Actin cytoskeleton and any subclasses
-
- |
-
-
- host |
-
-
- host:mouse
-
- host:10090
-
- host:40674
-
- |
-
- Lists all entries for viruses infecting:
-
- - organisms with a name containing the word "mouse"
- - Mus musculus (Mouse)
- - all mammals (all taxa classified under the taxonomy node for Mammalia)
-
- |
-
-
- id |
-
- id:P00750
- |
-
- Returns the entry with the primary
- accession number P00750.
- |
-
-
- inn |
-
-
- inn:Anakinra
-
- |
-
- Lists all entries whose "International Nonproprietary Name" is Anakinra.
- |
-
-
- interactor |
-
-
- interactor:P00520
-
- |
-
- Lists all entries describing interactions with the protein described by
- entry P00520.
- |
-
-
- keyword |
-
-
- keyword:toxin
-
- |
-
- Lists all entries associated with the keyword Toxin.
- |
-
-
- length |
-
-
- length:[500 TO 700]
-
- |
-
- Lists all entries describing sequences of length between 500 and 700 residues.
- |
-
-
- lineage |
- |
-
- This field is a synonym for the field taxonomy .
- |
-
-
- mass |
-
-
- mass:[500000 TO *]
-
- |
-
- Lists all entries describing sequences with a mass of at least 500,000 Da.
- |
-
-
- method |
-
-
- method:maldi
-
- method:xray
-
- |
-
- Lists all entries for proteins identified by: matrix-assisted laser
- desorption/ionization (MALDI), crystallography (X-Ray). The
- method field searches names of physico-chemical
- identification methods in the 'Biophysicochemical properties' subsection of the 'Function' section, the 'Publications' and
- 'Cross-references' sections.
- |
-
-
- mnemonic |
-
-
- mnemonic:ATP6_HUMAN
-
- |
-
- Lists all entries with entry name (ID) ATP6_HUMAN. Searches also
- obsolete entry names.
- |
-
-
- modified |
-
-
- modified:[20120101 TO 20120301]
- reviewed:yes AND modified:[current TO *]
-
- |
-
- Lists all entries that were last modified between January and March 2012.
- Lists all UniProtKB/Swiss-Prot entries modified in the last release.
- |
-
-
- name |
-
-
- name:"prion protein"
-
- |
-
- Lists all entries for prion proteins.
- |
-
-
- organelle |
-
-
- organelle:Mitochondrion
-
- |
-
- Lists all entries for proteins encoded by a gene of the mitochondrial
- chromosome.
- |
-
-
- organism |
-
-
- organism:"Ovis aries"
-
- organism:9940
-
- organism:sheep
-
-
- |
-
- Lists all entries for proteins expressed in sheep (first 2 examples) and
- organisms whose name contains the term "sheep".
- |
-
-
-
- plasmid |
-
-
- plasmid:ColE1
-
- |
-
- Lists all entries for proteins encoded by a gene of plasmid ColE1.
- |
-
-
- proteome |
-
-
- proteome:UP000005640
-
- |
-
- Lists all entries from the human proteome.
- |
-
-
- proteomecomponent |
-
-
- proteomecomponent:"chromosome 1" and organism:9606
-
- |
-
- Lists all entries from the human chromosome 1.
- |
-
-
- replaces |
-
-
- replaces:P02023
-
- |
-
- Lists all entries that were created from a merge with entry P02023.
- |
-
-
- reviewed |
-
-
- reviewed:yes
-
- |
-
- Lists all UniProtKB/Swiss-Prot entries.
- |
-
-
- scope |
-
-
- scope:mutagenesis
-
- |
-
- Lists all entries containing a reference that was used to gather
- information about mutagenesis.
- |
-
-
- sequence |
-
-
- sequence:P05067-9
-
- |
-
- Lists all entries containing a link to isoform 9 of the sequence
- described in entry P05067. Allows searching by specific sequence
- identifier.
- |
-
-
- sequence_modified |
-
-
- sequence_modified:[20120101 TO 20120301]
- reviewed:yes AND sequence_modified:[current TO *]
-
- |
-
- Lists all entries whose sequences were last modified between January and March 2012.
- Lists all UniProtKB/Swiss-Prot entries whose sequences were modified in the last release.
- |
-
-
- source |
-
-
- source:intact
-
- |
-
- Lists all entries containing a GO term whose annotation source is the
- IntAct database.
- |
-
-
- strain |
-
-
- strain:wistar
-
- |
-
- Lists all entries containing a reference relevant to strain wistar.
- |
-
-
- taxonomy |
-
-
- taxonomy:40674
-
- |
-
- Lists all entries for proteins expressed in Mammals. This field is used to retrieve
- entries for all organisms classified below a given taxonomic node taxonomy classification).
- |
-
-
- tissue |
-
-
- tissue:liver
-
- |
-
- Lists all entries containing a reference describing the protein sequence
- obtained from a clone isolated from liver.
- |
-
-
- web |
-
-
- web:wikipedia
-
- |
-
- Lists all entries for proteins that are described in Wikipedia.
- |
-
-
+