X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Funiprotsequencefetcher.html;h=72e7649a1b429f6895e2810f1d41b3c886a63f87;hb=801c367379086cc38bf4d3059a8e30ca9f4e78c0;hp=13c84dbda0cdcdbd2cc9a55299bd2697d44d2cbe;hpb=dde303bc73617ab4eb3e681e67cf899e6a971318;p=jalview.git diff --git a/help/html/features/uniprotsequencefetcher.html b/help/html/features/uniprotsequencefetcher.html index 13c84db..72e7649 100644 --- a/help/html/features/uniprotsequencefetcher.html +++ b/help/html/features/uniprotsequencefetcher.html @@ -25,7 +25,7 @@ The UniProt Free Text Search Interface -
Since version 2.10 (September 2016), the Jalview Desktop +
Since version 2.10 (October 2016), the Jalview Desktop provides a search interface for interactive discovery and retrieval of sequence data from UniProt. This dialog enables UniProt sequence metadata to be searched with free text and structured queries, which @@ -44,12 +44,15 @@

- Searching the UniProt Database + Searching the UniProt Database

-

- To search UniProt, simply begin typing in the text box. After a - short delay (about 1.5 seconds), results will be shown in the table - below. You can sort results by clicking on the displayed columns, +

To search UniProt, simply begin typing in the text box. If the + 'autosearch' check box is enabled, then after a short delay (about + 1.5 seconds), results will be shown in the table below. Results are + also updated whenever you press Enter, and you can access previous + searches by pressing the 'Down' arrow or clicking the drop-down menu + icon at the side of the search box.

+

You can sort results by clicking on the displayed columns, and select entries with the mouse or keyboard. Once you have selected one or more entries, hit the OK button to retrieve the sequences. @@ -61,11 +64,8 @@

  • Bulk UniProt record retrieval
    To - retrieve several uniprot accessions at once, first select UniProt - ID from the dropdown menu, then paste in the accession IDs as a - semi-colon separated list. (e.g. fila_human; mnt_human; - mnt_mouse).
    Hitting Return or OK will automatically fetch - those IDs, like the default Sequence Fetcher interface.
    • + retrieve sequences for a list of Uniprot accessions, please enter + them via the 'Retrieve IDs' tab.
  • Complex queries with the UniProt query Syntax The text box also allows complex @@ -160,7 +160,7 @@

    To change the displayed meta-data in the search result, click the 'Customise Displayed Options' tab, and select the fields you'd - like to displayed or remove.

    + like to be displayed or removed.

    The UniProt Free Test Search Interface was introduced in Jalview 2.10.0