X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fvarna.html;h=20bc0ac8b305b2765890a62cc008dabdba80f6ed;hb=ab43013b7e357b84b4abade0dba949668dfb2a0e;hp=507b26fcbbc38a703f3e8f8609da2edc1eff072b;hpb=797df64fa2a0a30773d0f48f5494d4155e5a8be3;p=jalview.git diff --git a/help/html/features/varna.html b/help/html/features/varna.html index 507b26f..20bc0ac 100644 --- a/help/html/features/varna.html +++ b/help/html/features/varna.html @@ -1,74 +1,76 @@ - - -
-The VARNA RNA Viewer
-Since Jalview -2.7.1, VARNA has been -integrated into Jalview for interactively viewing structures opened by -selecting the "Structure→View -Structure:" option in -the sequence id pop-up menu (if -you can't see this, then no RNA structure is associated with your -sequence or alignment. In the pop-up menu all structures that -are associated with this sequence and all sequences that are -associated with the alignment are available. - -
Different structures
-Controls
-
Functionality provided by VARNA
-VARNA's own functions are accessed by right-clicking in the -structure display area. That will open the VARNA pop-up menu, -which provides access to a number of features like different draw algorithm, color highlighting or annotations. -
-More Information
-VARNA is a very powerful RNA viewer on its own. Only the -essentials have been described here - the interested reader is -referred to VARNA's own -comprehensive online documentation.
- - + + + +The VARNA RNA Viewer
+VARNA was +integrated into Jalview 2.8 to allow interactive viewing of RNA secondary structure annotation. It is opened by +selecting the "Structure→View +Structure:" option in +the sequence id pop-up menu (if +you can't see this, then no RNA structure is associated with your +sequence or alignment). In the pop-up menu all structures that +are associated with this sequence and all sequences that are +associated with the alignment are available. + +
Different structures
+Controls
+
Functionality provided by VARNA
+VARNA's own functions are accessed by right-clicking in the +structure display area. That will open the VARNA pop-up menu, +which provides access to a number of features like different draw algorithm, color highlighting or annotations. +
+More Information
+VARNA is a very powerful RNA viewer on its own. Only the +essentials have been described here - the interested reader is +referred to VARNA's own +comprehensive online documentation.
+ +