X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fvarna.html;h=7587ea78e30de8210ffa05097f7beaf124d988e5;hb=023d23abaad346f745b93fced2407d7342ab7171;hp=12d9207107a8c46cd9d9640306a083e8b004e15e;hpb=ab1c8821340f7c198c03d6209609e3b1bbb38113;p=jalview.git diff --git a/help/html/features/varna.html b/help/html/features/varna.html index 12d9207..7587ea7 100644 --- a/help/html/features/varna.html +++ b/help/html/features/varna.html @@ -1,74 +1,77 @@ - - -
-The VARNA RNA Viewer
-Since Jalview -2.7.1, VARNA has been -integrated into Jalview for interactively viewing structures opened by -selecting the "Structure→View -Structure:" option in -the sequence id pop-up menu (if -you can't see this, then no RNA structure is associated with your -sequence or alignment. In the pop-up menu all structures that -are associated with this sequence and all sequences that are -associated with the alignment are available. - -
Different structures
-Controls
-
Functionality provided by VARNA
-VARNA's own functions are accessed by right-clicking in the -structure display area. That will open the VARNA pop-up menu, -which provides access to a number of features like different draw algorithm, color highlighting or annotations. -
-More Information
-VARNA is a very powerful RNA viewer on its own. Only the -essentials have been described here - the interested reader is -referred to VARNA's own -comprehensive online documentation.
- - + + + +The VARNA RNA Viewer
+VARNA was +integrated into Jalview 2.8 to allow interactive viewing of RNA secondary structure annotation. It is opened by +selecting the "Structure→View +Structure:" option in +the sequence id pop-up menu (if +you can't see this, then no RNA structure is associated with your +sequence or alignment). In the pop-up menu all structures that +are associated with this sequence and all sequences that are +associated with the alignment are available. +
Saving a Jalview session as a project file includes the state of any Varna viewers, which are reopened when the project is reloaded (since Jalview 2.9). + +
Different structures
+Controls
+
Functionality provided by VARNA
+VARNA's own functions are accessed by right-clicking in the +structure display area. That will open the VARNA pop-up menu, +which provides access to a number of features like different draw algorithm, color highlighting or annotations. +
+More Information
+VARNA is a very powerful RNA viewer on its own. Only the +essentials have been described here - the interested reader is +referred to VARNA's own +comprehensive online documentation.
+ +